Nitrogenase — hydrogenase relationships in Rhizobium japonicum

The conditions necessary for coordinate derepression of nitrogenase and O₂-dependent hydrogenase activities in free-living cultures of Rhizobium japonicum were studied. Carbon sources were screened for their ability to support nitrogenase, and then hydrogenase activities. There was a positive correlation between the level of nitrogenase and corresponding hydrogenase activities among the various carbon substrates. The carbon substrate -ketoglutarate was able to support the highest levels of both nitrogenase and hydrogenase activities. When cells were incubated in -ketoglutarate-containing medium, without added H₂ but in the presence of acetylene (to block H₂ evolution from nitrogenase) significant hydrogenase activity was still observed. Complete inhibition of nitrogenase-dependent H₂ evolution by acetylene was verified by the use of a Hup^- mutant. Hydrogen is therefore not required to induce hydrogenase. The presence of 10% acetylene inhibited derepression of hydrogenase. Constitutive (Hup^c) mutants were isolated which contained up to 9 times the level of hydrogenase acitivity than the wild type in nitrogenase induction medium. These mutants did not have greater nitrogenase activities than the wild type.This is contribution number 1254 from the Department of Biology and the McCollum-Pratt Institute Abbreviations: -Ketoglutarate-containing medium (LOKG) and pre-adaptation medium (SRM) as described in Materials and methods     

Is the fur gene of Rhizobium leguminosarum essential?

Using primers corresponding to conserved regions of the bacterial regulatory gene fur, a homologue of this gene from the genome of Rhizobium leguminosarum biovar viciae, the nitrogen-fixing symbiont of peas, was isolated and sequenced. The fur gene is normally expressed constitutively, independent of the presence of Fe in the medium, but in one Rhizobium strain it was transcribed at a low level. Attempts to isolate a fur knockout mutant failed, suggesting that the gene is essential for free-living growth. In other bacteria, certain fur mutations confer manganese resistance; however, none of the manganese-resistant mutants of R. leguminosarum which we isolated was corrected by the cloned fur gene. When the cloned R. leguminosarum fur gene was introduced into a fur mutant of Escherichia coli, it caused some Fe-dependent reduction in the amount of siderophore, indicating that it can function heterologously.     

Aromatic metabolism in Rhizobium trifolii —protocatechuate 3,4-dioxygenase

Protocatechuate 3,4-dioxygenase (EC 1.13.11.3) has been purified 42-fold from 4-hydroxybenzoate-grown cells of Rhizobium trifolii TA1, where it constitutes about 2% of the cell protein. The dioxygenase has a molecular weight of 220,000, with two dissimilar sub-units of molecular weights 29,000 and 26,500, corresponding to an 44 composition. The enzyme is specific for protocatechuate, with a Km of 1.75×10^-5 M and maximum activity at pH 9.2. Metal removal and replacement studies indicate that the enzyme contains complexed Fe³⁺ which is required for activity. Direct atomic absorption analysis gave 1.3–1.5 g atoms Fe³⁺ per mole of isolated enzyme, but correction for metal-deficient proteins suggests that the value is close to 2.     

Nitrite reduction in Rhizobium “hedysari” strain HCNT 1

Rhizobium hedysari strain HCNT 1 rapidly reduced nitrite to N₂O, only slowly reduced nitrate to nitrite and did not exhibit nitrous oxide reductase activity. Nitrite reduction in this rhizobium strain may be a detoxification mechanism for conversion of nitrite, which inhibits O₂ uptake, to non-toxic N₂O. Concentrations of nitrite as small as 3 M diminished O₂ uptake in whole cells. The bacterium did not couple energy conservation with nitrate or nitrite reduction. Cells neither grew anaerobically at the expense of these nitrogen oxides nor translocated protons during reduction of nitrite. Induction of nitrite reductase activity was not a response to the presence of nitrate or nitrite, but occurred instead when the O₂ concentration in culture atmospheres fell to <16.5% of air saturation. Sensitivity of cytochrome o, which is synthesized only in cells grown under O₂-limited conditions, may account for the toxicity of nitrite in strain HCNT 1.     

新型脱氮菌Rhizobium radiobacter的分离鉴定及其硝化特征分析

旨在从污水处理厂中分离和鉴定具有硝化能力的脱氮菌。采用富集培养、平板划线分离菌株,命名为N312,并通过形态观察、16S r DNA基因序列分析及Biolog鉴定,利用正交试验法对该菌株的培养基配方进行优化。结果表明,分离获得具有硝化能力的自养脱氮菌,初步鉴定属于放射型根瘤菌(Rhizobium radiobacter),为革兰氏阴性杆菌,菌落圆形,乳白色,6 d内亚硝酸盐去除率达到100%,通过正交试验初步得到最佳培养基配方为Na NO2 1.5 g,Na2CO3 1.5 g,MgSO·7H42O 0.25 g,FeSO·7H42O 0.2g,KH2PO4 0.5 g。菌株N312是一株具有研究价值的自养脱氮菌。     

Plant Cell Wall Remodelling in the Rhizobium–Legume Symbiosis

Colonization of host cells by rhizobium bacteria involves the progressive remodelling of the plant–microbial interface. Following induction of nodulation genes by legume-derived flavonoid signals, rhizobium secretes Nod-factors (lipochitin oligosaccharides) that cause root hair deformations by perturbing the growth of the plant cell wall. The infection thread arises as a tubular ingrowth bounded by plant cell wall. This serves as a conduit for colonizing bacterial cells that grow and divide in its lumen. The transcellular orientation of thread growth is controlled by the cytoskeleton and is coupled to cell cycle reactivation and cell division processes. In response to rhizobium infection, host cells synthesize several new components (early nodulins) that modify the properties of the cell wall and extracellular matrix. Root nodule extensins are a legume-specific family of hydroxyproline-rich glycoproteins targeted into the lumen of the infection thread. They have alternating extensin and arabinogalactan (AGP) glycosylation motifs. The structural characteristics of these glycoproteins suggest that they may serve to regulate fluid-to-solid transitions in the extracellular matrix. Extensibility of the infection thread is apparently controlled by peroxide-driven protein cross-linking and perhaps also by modification of the pectic matrix. Endocytosis of rhizobia from unwalled infection droplets into the host cell cytoplasm depends on physical contact between glycocalyx components of the plant and bacterial membrane surfaces. As endosymbionts, bacteroids remain enclosed within a plant-derived membrane that is topologically equivalent to the plasma membrane. This membrane acquires specialist functions that regulate metabolite exchanges between bacterial cells and the host cytoplasm. Ultimately, however, the fate of the symbiosome is to become a lysosome, causing the eventual senescence of the symbiotic interaction.     

Rhizobium sp. N613胞外多糖的抗氧化活性

以铁氰化钾和铁离子为检测系统测定了Rhizobium sp.N613胞外多糖(REPS)对氧化物的还原力;H2O2和Fe2+为羟自由基生成系统检测了REPS对羟自由基的清除作用;邻苯三酚自氧化法检测了REPS对超氧阴离子的清除作用;并体外检测了REPS对H2O2引起的氧化溶血现象的抑制作用及对小鼠肝组织脂质过氧化损伤的保护作用。结果显示,REPS对氧化物具有明显的还原力,其对羟自由基的清除作用达到35.46%(多糖浓度为2mg/mL),对超氧阴离子的清除作用达到36.84%(多糖浓度为0.78mg/mL),对H2O2引起的氧化溶血现象的抑制作用达到43.84%(多糖浓度为1.14mg/mL),对小鼠肝组织脂质过氧化的保护作用达到34.46%(多糖浓度为1.14mg/mL),表明REPS具有良好的抗氧化作用,有着重要的应用价值。     

草木樨根瘤菌(Rhizobium meliloti)高效菌株筛选初报

草木樨是辽宁西部主要的牧草绿肥品种。目前生产上存在着前期生长缓慢,产草量低的问题,施用根瘤菌肥料对促进生长,提高鲜草产量有重要作用。为此,我们自1980年开展了草木樨根瘤菌优良菌株筛选工作。现将1980年—1981年筛选结果整理如下。一、草木樨根瘤菌菌种形态及培养特     

Analysis of Phaseolus–Rhizobium interactions in a subsistence farming system

Poor bean yields in the Cunha region of the Mata Atlântica ecosystem in the state of São Paulo, Brazil, are associated with low agronomic inputs, plant disease, and soil erosion. To identify sustainable farming practices that increase production and maximize biological N2 fixation (BNF), the effects of soil fertility and plant cultivar on seed yield and root nodule formation were measured under standard agronomic practices. Results from 16 sites showed that fertilizing with lime and molybdenum increased seed yields to 370% for the landrace Serro Azul. In addition to increased yields, plants grown with fertilizer had more nodules. Marked strains of Rhizobium tropici were tested under controlled environments. An indicator strain of Rhizobium containing the gusA marker gene was used. Our results verify that the indicator strain CM-255 GusA+Hup+ had a high capacity to associate with the five bean varieties tested. Fertilization with P, K, S + micronutrients and liming were essential for better nodulation by the indicator strain. Under low fertility conditions, the landrace variety Serro Azul was poorly nodulated, when associated with native strains or with the indicator strain. However, under better soil fertility conditions, nodulation of Serro Azul by the marked Rhizobium strain was increased. The commercial variety Carioca 80SH showed no increase in nodulation (nodule number).     

Synthesis of β(1–2)glucan in Rhizobium loti

Fast growing strains of Rhizobium loti isolated from nodules of Lotus tenuis of the flooding Pampas of Argentina produced cellular (1–2)glucans having a higher degree of polymerization and more anionic substituents than (1–2)glucans accumulated by Agrobacterium tumefaciens cells. Inner membranes of R. loti contained a 235 kDa (1–2)glucan intermediate protein indistinguishable by polyacrylamide gel electrophoresis from the intermediate protein present in A. tumefaciens inner membranes. Incubation of inner membrannes of R. loti with UDP-Gle led to the formation of neutral (1–2)glucans with a higher degree of polymerization than glucans formed by A. tumefaciens inner membranes.Introduction in R. loti strains of plasmid pCD523 containing A. tumefaciens chvA and chvB virulence regions yielded strains that accumulated 4 times more cellular (1–2)glucans than wild type cells. This glucan was, regarding anionic substitution and degree of polymerization, indistinguishable from A. tumefaciens (1–2)glucans. Furthermore inner membranes of these R. loti exoconjugant cells contained higher levels of the 235 kDa (1–2)glucan intermediate protein and formed in vitro 8 times more neutral (1–2)glucan with a degree of polymerization corresponding to A. tumefaciens (1–2)glucan than inner membranes isolated from wild type cells.It was concluded that A. tumefaciens chvB gene is expressed in R. loti and determined the degree of polymerization of (1–2)glucan.Abbreviations Nod⁺ effective nodulation - Vir⁺ virulent - Vir^- avirulent - Trp^r trimethoprim resistence - Tc^r tetracycline resistence - TCA trichloroacetic acid - PMSF phenyl methyl sulfonyl fluoride     

Nitrite reduction in Bacteroids of Rhizobium “hedysari” strain HCNT 1

Ex planta, bacteroids of the sulla-symbiont Rhizobium hedysari strain HCNT 1 terminated reduction of nitrite at nitrous oxide irrespective of the presence or absence of acetylene. Nitrate was not reduced during the experimental period, but slight nitrate reductase activity occurred if incubation with nitrate was prolonged (up to 15 h). As was observed in free-living cells, exposure of the bacteroids to the metal chelator, diethyldithiocarbamate, prevented reduction of nitrite, indicating the presence of a copper-containing nitrite reductase. Pulses of 10–75 M nitrite transiently impeded O₂ uptake in bacteroids, which resumed consumption of O₂ when the nitrite had been reduced. Exposure to >1.0 mM nitrite for 24h greatly inhibited nitrogenase activity (assayed as acetylene reduction activity) of bacteroids in planta. Exposure to the same concentrations of nitrite after 1h of incubation in the presence of acetylene almost completely stopped ongoing ethylene production in bacteroids of strain HCNT 1 extracted from nodules. Free cells of the non-nitrite-reducing R. hedysari strain CC 1335 were lacking in nitrogenase (acetylene-reduction) activity, whereas identically cultured (low-oxygen) strain HCNT 1 cells reduced both nitrite and acetylene.Abbreviations PMS phenazine methosulfate - DDC diethyldithiocarbamate     

Surface carbohydrates of Rhizobium I. β-1, 2-Glucans

Because of increased interest in surface carbohydrates of Rhizobium in relation to host specificity, phenol — water extractions were carried out of whole cells of Rhizobium strains of the species R. leguminosarum, R. phaseoli, R. trifolii and R. meliloti.Fractionation of the crude extracts with cetavlon afforded polysaccharide mixtures, which were essentially free of RNA and acidic exopolysaccharide (EPS). They could be separated into a high molecular weight heteropolysaccharide fraction of lipopolysaccharide (LPS) nature and a low molecular weight glucan fraction. Glucan turned out to be the principal polysaccharide component of the cells (up to 10% of the dry cell weight), when cultivated in carbohydrate-rich media, and to be present as firmly attached capsular material.Glucan (mol wt 3000) structure was elucidated by methylation and periodate oxidation techniques. Methylation yielded 3, 4, 6-tri-O-methyl-d-glucose, characterized by GLC-MS, as the only product of hydrolysis of the fully methylated glucan. The glucan consumed 1 mole of periodate per mole anhydroglucose unit and gave sophorose on partial hydrolysis. From these data a linear -1,2-linked glucan structure was deduced. The occurrence of -1,2-glucan and the implications for the specific binding properties of Rhizobium cells are discussed.     

大豆根瘤菌(Rhizobium—japonicum)新菌株引种鉴定试验总结

三年来,为了鉴定引进新菌株的固氮效能和适应条件,以便筛选出适于我省的高效大豆根瘤菌株,我们进行了盆栽和田间小区试验,现将试验结果总结如下。一、试验材料和方法供试土壤为沈阳地区草甸土、棕黄土、朝阳褐色土和本院底层河沙(1978年河沙未灭菌,1979年则经过局部灭菌)。供试大豆品种为铁丰18。试验分别在砂培和田间小区进行。     

Feinstrukturanalyse der komplexen Geißeln von Rhizobium lupini H 13-3

Zusammenfassung Zellen von Rhizobium lupini H 13-3 besitzen 5–10 peritrich inserierte komplexe Geißeln, deren Feinstruktur durch Hochauflösungs-Elektronenmikroskopie und lichtoptische Diffraktion analysiert wurde. Das Geißelfilament hat einen Durchmesser von 160 Å und besteht aus einem zylindrischen Kern (Durchmesser ca. 110 Å), der fest von drei Bändern einer helikalen Scheide umgeben ist. Die Scheidenbänder sind 49 Å breit, durch 49 Å-Intervalle voneinander getrennt und haben eine Steigung von 31°. Die komplexen Geißelfilamente bestehen aus einem 43 000-Dalton-Protein, das den Kern und die helikale Scheide aufbaut. Beide gehen übergangslos aus dem proximalen Geißelhaken hervor, der einen Durchmesser von 150 Å und eine Länge von 600 bis 800 Å hat. Die Diffraktionsanalyse des Geißelhakens zeigte eine helikale Grundanordnung von globulären Untereinheiten, die ein Oberflächengitter von 5 parallelen Schrauben (Steigung 29° bzw. 33°) bilden, von denen jede fast 11 Untereinheiten pro Helixungang trägt. Die komplexen Geißeln von R. lupini H 13-3 und Pseudomonas rhodos [Schmitt et al.: J. Bact. 117, 844–857 (1974)] sind ein neuer Typ von Bakteriengeißeln. Sie zeigen deutliche Übereinstimmung in der Feinstruktur, der festen Verbindung von helikaler Scheide und Geißelhaken sowie in der Fragilität ihrer Filamente; sie unterscheiden sich deutlich im Molekulargewicht der Flagellinmonomeren (43 000 bzw. 55 000). Zellen von R. lupini H 13-3 führen schnelle, vibrierende Translationsbewegungen aus. Mögliche Mechanismen der Bewegung komplexer Geißeln werden diskutiert.

---

Fine structure analysis of the complex flagella of Rhizobium lupini H 13-3

Cells of Rhizobium lupini H 13-3 possess 5 to 10 peritrichously inserted complex flagella, which were analyzed by high resolution electron microscopy and by optical diffraction. The flagellar filament has a diameter of 160 Å; it consists of a cylindrical core (diameter approximately 110 Å) surrounded by three close-fitting bands of a helical sheath. The helical bands are 49 Å wide, separated by axial intervals, 49 Å wide, and run at an angle of 31°. Complex filaments consist of a 43 000-dalton protein representing the core and the helical sheath. These originate from the proximal hook, which has a diameter of 150 Å and a length of 600 to 800 Å. The diffraction analysis of the hook showed a helical arrangement of globular subunits forming a surface of 5 parallel small-scale helices (pitch-angles 29° and 33°, respectively), each carrying almost 11 subunits per period. The complex flagella of R. lupini H 13-3 and Pseudomonas rhodos [Schmitt, et al.: J. Bact. 117, 844–857 (1974)] represent a novel type of bacterial flagella. There is agreement in their fine structures, in the intimate connection of the helical sheath and the core, and in the fragility of their filaments. Thery are clearly distinguished by the molecular weights of their flagellin monomers (43 000 and 55 000, respectively). Cells of R. lupini H 13-3 show fast, vibrating, translational motions. Possible mechanisms of complex flagellar motion are discussed.

Herrn Professor Wolfram Heumann zum 60. Geburtstag gewidmet.     

Regulation of the β-ketoadipate pathway in Rhizobium japonicum and bacteroids by succinate

Rhizobium japonicum 61-A-101 and its bacteroids catabolize phenol and p-hydroxybenzoate. With phenol as a carbon source, utilization started only after a prolonged lag phase while p-hydroxybenzoate was almost instantancously metabolized. Succinate, which supports rapid growth of Rhizobium japonicum, completely repressed respication of phenol; the oxidation of p-hydroxybenzoate was partially inhibited. Pyruvate, supporting slower growth than succinate, retarded the onset of phenol consumption but did not affect its maximum rate.Catabolite repression of phenol utilization by succinate appears to be a characteristic feature of rhizobia. In Pseudomonas putida which also actively metabolizes phenol, succinate had no effect on phenol utilization.     

小分子Rhizobium sp. N613胞外多糖的制备及其抗肿瘤活性

采用微波辐照氧化技术,降解大分子Rhizobium sp.N613胞外多糖(REPS)为小分子多糖(LREPS),以改善其理化及抗肿瘤活性,提高应用价值和拓展应用范围。通过正交试验考察了底物浓度、H2O2浓度、微波辐照强度和辐照时间对降解产物分子量的影响并获得一系列LREPS产物。选取4组分子量段(10以下、10、20和30 kD左右)的LREPS代表性样品进行小鼠体内S180抑瘤效果检测,其中分子量段为10.352 kD的LREPS效果最佳,抑瘤率高达52.8%,确定为LREPS的最适分子量段。其制备工艺条件为:REPS浓度为2 g/L、H2O2浓度为6%、微波辐照强度为375 W、微波辐照时间为2 min;理化分析结果表明,LREPS的红外图谱与REPS相似,仍为β-D-吡喃葡聚糖。其溶解度由原多糖的8.00 g/L增至15.73 g/L,特性粘数由原多糖的527.64 mL/g降至351.67 mL/g。建立了LREPS制备工艺并获取了相关理化及抗肿瘤技术参数,为该多糖制剂的生产应用奠定一定基础。