Cambrian Series 3 lithistid sponge–microbial reefs in Shandong Province,North China: reef development after the disappearance of archaeocyaths

The Cambrian Series 3 Zhangxia Formation in Shandong Province, North China, includes small‐scale lithistid sponge–microbial reefs. The lithistid sponges grew on oolitic and bioclastic sediments, which were stabilized by microbial activities. The relative abundances of microbial components (e.g. calcimicrobe Epiphyton and stromatolites) vary among the reefs. However, the microbial components commonly encrusted or bound the lithistid sponges, formed remarkable encrustations on the surfaces of the sponges. Epiphyton especially grew upward and downward. The lithistid sponges thus provided substrates for the attachment and development of microbes, and the microbes played essential roles as consolidators, by encrusting reef‐building sponges. Additionally, the lithistid sponges were prone to degradation via microbial activities and diagenetic processes, and were thus preserved as micritic bodies, showing faint spicular networks or abundant spicules. Such low preservation potential within the reef environment obscured the presence of the sponges and their widespread contribution as reef‐building organisms during the Cambrian. During the prolonged interval after the demise of archaeocyaths, purely microbial reefs, such as stromatolites and thrombolites have been considered to be the principal reef builders, in association with rare lithistid sponge–microbial associations. However, recent findings, including those from Shandong Province and Korea, suggest that the lithistid sponge‐bearing reefs were more extensive during the Epoch 3 to the Furongian than previously thought. These lithistid sponge–microbial reefs were precursors of the sponge–microbial reefs that dominated worldwide in the Early Ordovician.     

河南登封寒武系第三统张夏组核形石与遗迹化石的耦合变化

河南登封关口剖面寒武系第三统张夏组下部碳酸盐岩中发育了大量的微生物成因的核形石和后生动物遗迹化石。在野外和显微镜下对核形石和遗迹化石进行观察,并统计它们在地层中所占比例,表明核形石和遗迹化石存在着耦合关系。下部地层以发育凝块石和形状不规则、纹层不连续、代表一种低能弱搅动水体的Ⅰ型核形石为主,不含遗迹化石,表明此时微生物在海洋生态系统中占主导地位。中部地层则以发育浑圆形、纹层连续的Ⅱ型核形石和遗迹化石Planolites为特征;而且随水体能量的增强,Planolites丰度逐渐升高,核形石丰度逐渐降低;二者的丰度变化说明后生动物的存在对核形石的数量有一定影响,但未破坏核形石的生长条件。上部地层发育大量Thalassinoides和生物扰动构造,缺乏核形石;后生动物对沉积基底进行反复扰动,彻底破坏了原始层理以及微生物造岩的环境,核形石消失。可见,在张夏组沉积时期,微生物与后生动物以及环境之间存在着特殊的相互作用关系。     

Middle Jurassic (Bathonian) encrusted oncoids from the Polish Jura,southern Poland

Oncoids from two localities (Ogrodzieniec and Blanowice) of the Polish Jura, southern Poland, have been investigated with respect to their genesis and paleoecology. These oncoids occur within Middle Jurassic (Bathonian) deposits. Those from Ogrodzieniec are large, elliptical, and embedded within a presumably condensed carbonate bed. Those from Blanowice, on the contrary, are significantly smaller, irregular to box-like in shape, and occur within the ore-bearing clays. The oncoids from both localities consist of a distinct carbonate core and laminated cortex that is significantly thicker and better preserved in the Ogrodzieniec oncoids. SEM and optical microscopic investigation of the oncoid cortices revealed the presence of carbonate and silicate layers with web-like structures similar to those occurring in recent cyanobacterial microbialites. Thus, the oncoid cortices investigated may have formed in a photic zone environment with the aid of coccoid and filamentous cyanobacteria. Oxic conditions prevailed during oncoid cortex formation within the siliciclastic setting, which is manifested by low total organic carbon content, high pristane/phytane (Pr/Ph) ratio, and significant predomination of the C₃₁ homohopanes. On the cortices’ surfaces, as well as between particular laminae, various encrusting organisms have been found. The encrusters, dominated by serpulids and bryozoans, are cryptic species that inhabited the undersides and recesses of the oncoids. Their presence on both the upper and lower surfaces of the oncoids indicates that the oncoids were episodically overturned on the seafloor. The much better developed cortex lamination and much higher diversity and abundance of encrusters in the Ogrodzieniec oncoids may point to better trophic conditions prevailing in a shallower marine environment characterized by transparent waters, as opposed to a deeper siliciclastic environment with less transparent waters and probably worse trophic conditions prevailing during formation of the Blanowice oncoids.     

Taphonomy of Early Permian benthic assemblages (Carnic Alps, Austria): carbonate dissolution versus biogenic carbonate precipitation

During the Early Permian, in the area of the Carnic Alps, a quartz-gravelly beach fringed a mixed siliciclastic-carbonate lagoon with fleshy algal meadows and oncoids; seaward, an ooid shoal belt graded down dip to a low-energy carbonate inner shelf with phylloid algal meadows. In limestones, foraminiferal biomurae and bioclast preservation record tapholoss by rotting of non-calcified organisms (interpreted as fleshy algae) and by dissolution of aragonitic fossils. Carbonate loss by dissolution was counteracted and, locally, perhaps exceeded by carbonate precipitation of encrusting foraminifera and as oncoids. Sites of abrasion and carbonate dissolution (beach), sites with tapholoss by rotting and dissolution, but with microbialite/foraminiferal carbonate precipitation (lagoon, inner shelf), and sites only of carbonate precipitation (ooid shoals) co-existed on discrete shelf compartments. Compartmentalized, contemporaneous carbonate dissolution and precipitation, to total amounts yet difficult to quantify, impede straightforward estimates of ancient carbonate sediment budget.     

Contrasting engineering effects of leaf‐rolling caterpillars on a tropical mite community

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High arctic heath soil respiration and biogeochemical dynamics during summer and autumn freeze‐in – effects of long‐term enhanced water and nutrient supply

In High Arctic NE Greenland, temperature and precipitation are predicted to increase during this century, however, relatively little information is available on the role of increased water supply on soil CO ₂ efflux in dry, high arctic ecosystems. We measured soil respiration (R_soil) in summer and autumn of 2009 in combination with microbial biomass and nutrient availability during autumn freeze‐in at a dry, open heath in Zackenberg, NE Greenland. This tundra site has been subject to fully factorial manipulation consisting of increased soil water supply for 14 years, and occasional nitrogen (N) addition in pulses. Summer watering enhanced R_soil during summer, but decreased R_soil in the following autumn. We speculate that this is due to intensified depletion of recently fixed plant carbon by soil organisms. Hence, autumn soil microbial activity seems tightly linked to growing season plant production through plant‐associated carbon pools. Nitrogen addition alone consistently increased R_soil, but when water and nitrogen were added in combination, autumn R_soil declined similarly to when water was added alone. Despite several freeze‐thaw events, the microbial biomass carbon (C) remained constant until finally being reduced by ~60% in late September. In spite of significantly reduced microbial biomass C and phosphorus (P), microbial N did not change. This suggests N released from dead microbes was quickly assimilated by surviving microbes. We observed no change in soil organic matter content after 14 years of environmental manipulations, suggesting high ecosystem resistance to environmental changes.     

Top‐down control of microbial activity and biomass in an Arctic soil ecosystem

Globally, soil microbes preside over vast carbon stores, and both microbial biomass and activity are known to be regulated by bottom‐up controls, that is, limitation by nutrients and energy. However, there is evidence that grazing by protozoans exerts top‐down controls on biomass. Here, we investigate top‐down control by phage on soil microbes using an experimental site near Barrow, Alaska (71°N, 157°W) during the 2007 growing season. Soil measurements were taken from sites that covered a range of microtopographical features within a drained and thawed lake basin including high‐ and low‐centred ice‐wedge polygons to estimate the availability of carbon and nitrogen for microbes. Using both field and laboratory experiments, we successfully increased both microbial biomass and respiration by decreasing phage populations. The addition of carbon and nutrients to soils had no significant effects on biomass or respiration, indicating a lack of bottom‐up controls. Additionally, we present the first use of tea extracts as a potent anti‐phage agent in soils. Our results suggest that top‐down controls, such as phage predation, are critical to regulation of microbial activities in Arctic soils.     

Mineral evolution and processes of ferruginous microbialite accretion – an example from the Middle Eocene stromatolitic and ooidal ironstones of the Bahariya Depression,Western Desert,Egypt

Peritidal ferruginous microbialites form the main bulk of the Middle Eocene ironstone deposits of the Bahariya Depression, Western Desert, Egypt. They include ferruginous stromatolites and microbially coated grains (ferruginous oncoids and ooids). Their internal structures reveal repeated cycles of microbial and Fe oxyhydroxide laminae. The microbial laminae consist of fossilised neutrophilic filamentous iron‐oxidising bacteria. These bacteria oxidised the Fe(II)‐rich acidic groundwater upon meeting the marine water at an approximately neutral pH. The iron oxyhydroxide laminae were initially precipitated as amorphous iron oxhydroxides and subsequently recrystallised into nanocrystalline goethite during early diagenesis. Organic remains such as proteinaceous compounds, lipids, carbohydrates and carotenoids are preserved and can be identified by Raman spectroscopy. The ferruginous microbialites were subjected to post‐depositional subaerial weathering associated with sea‐level retreat and subsurface alteration by continued ascent of the Fe(II)‐rich acidic groundwater. At this stage, another iron‐oxidising bacterial generation prevailed in the acidic environment. The acidity of the groundwater was caused by oxidation of pyrite in the underlying Cenomanian Bahariya formation. The positive iron isotopic ratios and presence of ferrous and ferric iron sulphates may result from partial iron oxidation along the redox boundary in an oxygen‐depleted environment.     

高于庄古生物学(英)

距今 14～ 16亿年的华北地区高于庄组黑色层状、结核状和透镜状燧石与叠层石的黑色硅质部分中保存着极丰富的原核和真核生物微化石。宏观藻类在该组的页岩中亦已发现。本组为评估中元古代生命状况、古环境和前显生宙生物地层提供了重要的生物信息。迄今为止在高于庄组地层中已有百余个化石种被人们认识。根据古植物和古环境的特征这些生物种类可分为三个不同的组合 ,即 :1.颤藻和色球藻组合 ,出现在高于庄组一段 ,代表浅水藻席建造者和居住者与一些可能的外来浮游生物的种类 ;2 .念珠藻组合 ,仅发生在该组的二段 ,还含一些底栖藻席建造者或居住者的种类 ;3.第四段的色球藻组合 ,它代表了潮间带至亚潮带的藻席建造者和外来的种类。元古代燧石中的微化石 ,尤其是蓝藻化石 ,尽管在元古代它们就已不断趋向于多样化 ,但由于它们形态上的保守性 ,对环境的指示比对地质时代的指示更有价值。高于庄组微化石的特点和大多数链状念珠藻垂直层理保存的事实表明 :1.高于庄组微化石的个体大小随时间趋向于增大 ;2 .高于庄组的沉积可能是处于一个淡水环境 ,且沉积率可能等于或少于微生物的生长率 ;3.高于庄组织沉积模式可能是从潮间带至亚潮带或深海 ,然后再至潮间带或潮上带 ;4 .当高于庄组沉积时真核生物亦已出现。     

Intertwined interspecies relationships: approaches to untangle the microbial network

In nature, microorganisms live by interacting with each other. Microbiological studies that only consider pure cultures are not sufficient to adequately describe the natural behaviour of microbes. Several microbial interactions have been recognized to affect the growth or metabolism of others; e.g. syntrophic cometabolism, competition, production of inhibitors or activators, and predation. It is believed that third‐party organisms easily affect the two‐species relationships and these relationships form the basis of interspecies networks within microbial communities. A microbial network contributes to ‘functional redundancy’ or ‘structural diversity’ and the microbial communities effectively act as a multicellular organism. It is necessary to understand not only the physiological activity of members within microbial communities but also their roles to regulate the activity or population of others. To access the microbial network, we require (i) comprehensive determination of all possible interspecies relationships among microbes, (ii) knock‐out experiments by which certain members can be removed or suppressed, and (iii) supplemental addition of microbes or activation of certain members. Microbial network studies have started using defined microbial communities, i.e. a mixed culture that is composed of three or four species. In order to expand these studies to microflora in nature, microbial ecology requires the help of mathematical biology.     

Seasonal variability of ichthyoneuston assemblage on the continental shelf and slope of the Southwest Atlantic Ocean,Brazil (20°–23°S)

Many marine organisms spend the early life history stages in neuston domain. Although the importance of ichthyoneuston, few studies were developed in the Southwest Atlantic Ocean. Therefore, this study aimed to improve the knowledge on ichthyoneuston of the Brazilian coast analyzing the vertical stratification and horizontal distribution of these organisms. Neuston samples were collected in daylight between 20°S and 23°S from February to April 2009 (late summer/early autumn; rainy season) and from August to September 2009 (late winter/early spring; dry season). Eggs of six taxa were identified: Anguilliformes, Engraulidae, Clupeidae, Synodontidae, Trichiuridae, and Maurolicus stehmanni (Sternoptychidae). The neustonic larval fish assemblage was composed by 40 families and 63 species. Mullidae and Myctophidae larvae were the most abundant in the rainy period while Mullidae and Mugilidae dominated in the dry season. Seasonal and spatial variation of larval fish assemblages in the neuston were structured by oceanographic features. The larval fish abundance on the outer slope stations may have been favored by the advection of an anticyclone that encompassed most of the study region during the cruise periods. In the rainy season, salinity and local depth structured the larval fish assemblage in a cross‐shelf gradient, while in the dry season the larval assemblage was structured around temperature and north‐south gradient. In the dry season, the cross‐shelf gradient was less pronounced mainly because of the low abundance and frequency of mesopelagic larvae. The low frequency and abundance of some species are probably related to the net avoidance of fish larvae during the day or dial vertical migration, as many species migrate to deeper layers during the day and ascend to neuston only at night. Nevertheless, the present study presented baseline information about the seasonal and spatial variation of the neustonic larval fish assemblage influenced by the oceanographic conditions in the Campos Basin. We recommend to additionally collect night samples to decrease larval escapement rates and to compare night versus day catches to further investigate the influence of daily migration in the neustonic larval fish in the area.     

Scales of spatiotemporal variation in macroinvertebrate assemblage structure in monsoonal streams: the importance of season

1. We assessed the relative importance of different scales of spatial and temporal variability on benthic macroinvertebrate assemblage structure in six unpolluted streams in monsoonal Hong Kong using ordination and complementary multivariate analyses. The spatial scales were regions, sites (streams) and sections (riffles) within sites. The temporal scales were years (three, including one with unusually high rainfall), seasons (dry versus wet) and days within seasons. 2. Significant differences in assemblage structure were manifested at all temporal scales. Those at the site scale were most obvious, whereas demarcation of assemblage structure at the section (riffle) scale was smaller, and there was no significant regional differentiation in assemblage structure. Seasonal variability in assemblage structure was greater than that among years or days. 3. Inter‐year differences in assemblage structure were recorded at all sites, and were noted among all years at some sites but not at others. They were recorded more frequently during the dry season, although their occurrence (in pair‐wise comparisons between years) appeared to be related to differences in the monsoonal (wet season) rainfall. 4. Seasonal differences in assemblage structure were strongly evident at all sites. Inter‐site differences were more apparent during the dry season when local (site‐scale) influences on assemblages were stronger. By contrast, wet‐season samples were more variable because of spate‐induced disturbance, and inter‐site differentiation was less distinct. 5. Differences among days at all sites were relatively minor, but shifts attributable to repeated spate‐induced disturbance were evident at some sites during the wet season. 6. Differences at the section scale were recorded more frequently during the dry season, when the extent of within‐site variability among sections was higher, reflecting increased patchiness within sections resulting from increased substratum heterogeneity and/or greater intensity of biotic interactions. 7. Seasonal shifts in macroinvertebrate assemblage structure at a variety of scales in Hong Kong streams are likely to be attributable to monsoonal rains affecting the relative intensity of abiotic disturbance and biotic interactions in accordance with the harsh‐benign hypothesis.     

Mock communities highlight the diversity of host‐associated eukaryotes

Host‐associated microbes are ubiquitous. Every multicellular eukaryote, and even many unicellular eukaryotes (protists), hosts a diverse community of microbes. High‐throughput sequencing (HTS) tools have illuminated the vast diversity of host‐associated microbes and shown that they have widespread influence on host biology, ecology and evolution (McFall‐Ngai et al. 2013 ). Bacteria receive most of the attention, but protists are also important components of microbial communities associated with humans (Parfrey et al. 2011 ) and other hosts. As HTS tools are increasingly used to study eukaryotes, the presence of numerous and diverse host‐associated eukaryotes is emerging as a common theme across ecosystems. Indeed, HTS studies demonstrate that host‐associated lineages account for between 2 and 12% of overall eukaryotic sequences detected in soil, marine and freshwater data sets, with much higher relative abundances observed in some samples (Ramirez et al. 2014 ; Simon et al. 2015 ; de Vargas et al. 2015 ). Previous studies in soil detected large numbers of predominantly parasitic lineages such as Apicomplexa, but did not delve into their origin [e.g. (Ramirez et al. 2014 )]. In this issue of Molecular Ecology, Geisen et al. ( 2015 ) use mock communities to show that many of the eukaryotic organisms detected by environmental sequencing in soils are potentially associated with animal hosts rather than free‐living. By isolating the host‐associated fraction of soil microbial communities, Geisen and colleagues help explain the surprisingly high diversity of parasitic eukaryotic lineages often detected in soil/terrestrial studies using high‐throughput sequencing (HTS) and reinforce the ubiquity of these host‐associated microbes. It is clear that we can no longer assume that organisms detected in bulk environmental sequencing are free‐living, but instead need to design studies that specifically enumerate the diversity and function of host‐associated eukaryotes. Doing so will allow the field to determine the role host‐associated eukaryotes play in soils and other environments and to evaluate hypotheses on assembly of host‐associated communities, disease ecology and more.     

Middle‐Late Ordovician iron‐rich nodules on Yangtze Platform,South China,and their palaeoenvironmental implications

Iron‐rich nodules occur on the Yangtze Platform, South China, especially along the marginal area, during the late Middle and early Late Ordovician (Darriwilian–Sandbian). Based on the study of samples from the Daling section, Anhui Province, these nodules include: (1) oncoids; (2) coated bioclasts; and (3) coated micritic intraclasts, all of which potentially have a similar biological origin. The nodule‐bearing strata were deposited in a midouter ramp setting, indicating sediment starvation and open marine conditions, possibly combined with anoxia in deeper basinal areas and cool water upwelling during the formation of the nodules, rather than terrestrial input or local tectonic movement. The widespread distribution of iron‐rich nodules at this time was probably favoured by high sea level and cooling climate, conditions that simultaneously favoured the evolutionary radiations of the GOBE in South China. Thus, these nodules form a time‐specific signature of a critical time in the evolution of the marine ecosystem in the context of local environmental background along the marginal Yangtze Platform.     

Actin-based motility of intracellular microbial pathogens.

A diverse group of intracellular microorganisms, including Listeria monocytogenes, Shigella spp., Rickettsia spp., and vaccinia virus, utilize actin-based motility to move within and spread between mammalian host cells. These organisms have in common a pathogenic life cycle that involves a stage within the cytoplasm of mammalian host cells. Within the cytoplasm of host cells, these organisms activate components of the cellular actin assembly machinery to induce the formation of actin tails on the microbial surface. The assembly of these actin tails provides force that propels the organisms through the cell cytoplasm to the cell periphery or into adjacent cells. Each of these organisms utilizes preexisting mammalian pathways of actin rearrangement to induce its own actin-based motility. Particularly remarkable is that while all of these microbes use the same or overlapping pathways, each intercepts the pathway at a different step. In addition, the microbial molecules involved are each distinctly different from the others. Taken together, these observations suggest that each of these microbes separately and convergently evolved a mechanism to utilize the cellular actin assembly machinery. The current understanding of the molecular mechanisms of microbial actin-based motility is the subject of this review.     

Norian serpulid and microbial bioconstructions: Implication for the platform evolution in the Lombardy Basin (Southern Alps,Italy)

Summary The development of peculiar margin facies and abundant talus breccias within the Dolomia Principale inner platform is commonly observed in the Lombardy Basin during the Norian. The organisms building these margins are mainly serpulids, benthic microbes, subordinate porostomata and other encrusting forms; typical margin organisms, as sponges or corals, are extremely rare or absent. The build-ups form narrow rims along the borders of tectonic-controlled intraplatform basins. Regional back-stepping and progradation of the margin facies on the talus breccias produced by the erosion of the reef is commonly observed in the uppermost Dolomia Principale depositional system. Widespread occurrence of serpulids and microbial margins in middle-late Norian times is indicative of stressed environmental conditions—fluctuation of salinity and temperature on the inner platform and in the intraplatform basins—controlled by palaeogeographic setting. Physical characteristics allowed the bloom of forms able to develop in a wide range of environmental conditions, such as serpulids. In the Late Norian, major input of fine-grained clastics is recorded; close to the Norian-Rhaetian boundary, carbonate ramps were regionally restored. Locally, small serpulid and microbial bioconstructions still persist in the lowermost part of the shaly succession, even if they are less abundant with respect to the Dolomia Principale. Patch-reefs generally do not build a platform margin, but represent isolated mounds within shaly deposits. These build-ups occur on the edge of former structural highs; the communities survived the environmental change responsible for the siliciclastic input and locally managed to produce mounds during the deposition of the lower part of the upper depositional system (Riva di Solto Shale).     

The Influence of Altered Rainfall Regimes on Early Season N Partitioning Among Early Phenology Annual Plants,a Late Phenology Shrub,and Microbes in a Semi-arid Ecosystem

In Mediterranean-type ecosystems, nitrogen (N) accumulates in soil during dry summer months and rapidly becomes available during early season rain events. The availability of early season N could depend on the size of rainfall events, soil microbial activity, and phenology of the plant community. However, it is poorly understood how precipitation patterns affect the fate of early season N. Microbes and plants with early phenology may compete strongly for early season N but theory suggests that microbial N storage can meet plant N demands later in the season. Using a ¹⁵N tracer and rainfall manipulation we investigated the fate of early season N. N allocation patterns differed substantially between microbes, early and late phenology plants. As expected early phenology annuals and microbes took up ¹⁵N, within 1 day, whereas a late-phenology shrub allocated ¹⁵N to leaves later in the season. We saw no evidence for microbial storage of early season N; the peak of ¹⁵N in shrub leaves did not coincide with detectable levels of ¹⁵N in the microbial biomass or labile soil pool. This suggests that shrubs were able to access early season N, store and allocate it for growth later in the season. Although we saw no evidence of microbial N storage, N retention in soil organic matter (SOM) was high and microbes may play an important role in sequestering N to SOM. Plant N uptake did not respond significantly to 1 year of rainfall manipulation, but microbes were sensitive to dry conditions. 1 year after ¹⁵N addition shrubs had resorbed up to half of the N from leaves whereas N in annuals remained as dead leaf litter. Differences in end-of-season N partitioning between dead and living biomass in the two vegetation types suggest that plant species composition could affect N availability in the following growing season, but it may take several years of altered precipitation patterns to produce rainfall-dependent changes.     

Facies selectivity of benthic invertebrates in a Permian/Triassic boundary microbialite succession: Implications for the “microbialite refuge” hypothesis

Thrombolite and stromatolite habitats are becoming increasingly recognized as important refuges for invertebrates during Phanerozoic Oceanic Anoxic Events (OAEs); it is posited that oxygenic photosynthesis by cyanobacteria in these microbialites provided a refuge from anoxic conditions (i.e., the “microbialite refuge” hypothesis). Here, we test this hypothesis by investigating the distribution of ~34, 500 benthic invertebrate fossils found in ~100 samples from a microbialite succession that developed following the latest Permian mass extinction event on the Great Bank of Guizhou (South China), representing microbial (stromatolites and thrombolites) and non‐microbial facies. The stromatolites were the least taxonomically diverse facies, and the thrombolites also recorded significantly lower diversities when compared to the non‐microbial facies. Based on the distribution and ornamentation of the bioclasts within the thrombolites and stromatolites, the bioclasts are inferred to have been transported and concentrated in the non‐microbial fabrics, that is, cavities around the microbial framework. Therefore, many of the identified metazoans from the post‐extinction microbialites are not observed to have been living within a microbial mat. Furthermore, the lifestyle of many of the taxa identified from the microbialites was not suited for, or even amenable to, life within a benthic microbial mat. The high diversity of oxygen‐dependent metazoans in the non‐microbial facies on the Great Bank of Guizhou, and inferences from geochemical records, suggests that the microbialites and benthic communities developed in oxygenated environments, which disproves that the microbes were the source of the oxygenation. Instead, we posit that microbialite successions represent a taphonomic window for exceptional preservation of the biota, similar to a Konzentrat‐Lagerstätte, which has allowed for diverse fossil assemblages to be preserved during intervals of poor preservation.     

Regional‐scale patterns of soil microbes and nematodes across grasslands on the Mongolian plateau: relationships with climate,soil, and plants

Belowground communities exert major controls over the carbon and nitrogen balances of terrestrial ecosystems by regulating decomposition and nutrient availability for plants. Yet little is known about the patterns of belowground communities and their relationships with environmental factors, particularly at the regional scale where multiple environmental gradients co‐vary. Here, we describe the patterns of belowground communities (microbes and nematodes) and their relationships with environmental factors based on two parallel studies: a field survey with two regional‐scale transects across the Mongolia plateau and a water‐addition experiment in a typical steppe. In the field survey, soils and plants were collected across two large‐scale transects (a 2000‐km east–west transect and a 900‐km south–north transect). At the regional‐scale, the variations in soil microbes (e.g. bacterial PLFA, fungal PLFA, and F/B ratio) were mainly explained by precipitation and soil factors. In contrast, the variation in soil nematodes (e.g. density of trophic groups and the bacterial‐feeding/fungal‐feeding nematode ratio) were primarily explained by precipitation. These variations of microbe or nematode variables explained by environmental factors at regional scale were derived from different vegetation types. Along the gradient from nutrient‐poor to nutrient‐rich vegetation types, the total variation in soil microbes explained by precipitation increased and that explained by plant and soil decreased, while the opposite was true for soil nematodes. Experimental water addition, which increased rainfall by 30% during the growing season, increased biomass or density of belowground communities, with the nematodes being more responsive than the microbes. The different responses of soil microbial and nematode communities to environmental gradients at the regional scale likely reflect their different adaptations to climate, soil nutrients, and plants. Our findings suggest that the soil nematode and microbial communities are strongly controlled by bottom‐up effects of precipitation alone or in combination with soil conditions.     

Palaeontological and sedimentological effects of micro‐bioherms in the Middle Silurian Massie Formation of southeastern Indiana,USA

Small build‐ups composed primarily of micrite and benthic skeletal remains, termed ‘micro‐bioherms’, have been recognized within Silurian strata of eastern and midcontinental United States for well over 75 years; however, previous research has focused nearly entirely on such structures within the upper Wenlock (Homerian) Waldron Shale. An undolomitized section of the lower Wenlock (Sheinwoodian) Massie Formation in Ripley County, southeastern Indiana, was studied to assess the influence of micro‐bioherms on palaeoecological, taphonomical and sedimentological patterns. Increased baffling of fine‐grained material by organisms composing and/or encrusting build‐ups is evidenced by muddy sediment containing pascichnial traces surrounding micro‐bioherms. Pelmatozoan attachment structures densely encrust micro‐bioherms, but are swollen by secondary stereomic overgrowths reflecting some form of antagonistic interaction or investment in strong affixation to elevated substrates. Clusters of bumastine trilobite material occur in ‘pockets’ related to cavities within build‐ups, and otherwise rare spathacalymenid trilobites, often exceptionally preserved, are found in muds in the vicinity of partially buried micro‐bioherms. Coeval sections nearby are nearly unfossiliferous as result of dolomitization, but contain recognizable skeletal material in greatest abundance in micro‐bioherm flank beds. The occurrence of these bodies within the Massie Formation is genetically linked to a major transgressive episode, but also reflects a mid‐Silurian climatic/palaeoceanographic change.