Relationships between DOC bioavailability and nitrate removal in an upland stream: An experimental approach

The Catskill Mountains of southeastern New York State have among thehighest rates of atmospheric nitrogen deposition in the United States. Somestreams draining Catskill catchments have shown dramatic increases in nitrateconcentrations while others have maintained low nitrate concentrations. Streamsin which exchange occurs between surface and subsurface (i.e. hyporheic) watersare thought to be conducive to nitrate removal via microbial assimilationand/ordenitrification. Hyporheic exchange was documented in the Neversink River inthesouthern Catskill Mountains, but dissolved organic carbon (DOC) and nitrate(NO₃ ^–) losses along hyporheic flowpaths werenegligible. In this study, Neversink River water was amended with natural,bioavailable dissolved organic carbon (BDOC) (leaf leachate) in a series ofexperimental mesocosms that simulated hyporheic flowpaths. DOC and N dynamicswere examined before and throughout a three week BDOC amendment. In addition,bacterial production, dissolved oxygen demand, denitrification, and sixextracellular enzyme activities were measured to arrive at a mechanisticunderstanding of potential DOC and NO₃ ^– removalalong hyporheic flowpaths. There were marked declines in DOC and completeremoval of nitrate in the BDOC amended mesocosms. Independent approaches wereused to partition NO₃ ^– loss into two fractions:denitrification and assimilation. Microbial assimilation appears to be thepredominant process explaining N loss. These results suggest that variabilityinBDOC may contribute to temporal differences in NO₃ ^–export from streams in the Catskill Mountains.     

The role of micro-organisms in the ecological connectivity of running waters

1. Riparian zones hold a central place in the hydrological cycle, owing to the prevalence of surface and groundwater interactions. In riparian transition zones, the quality of exfiltrating water is heavily influenced by microbial activities within the bed sediments. This paper reviews the role of micro-organisms in biogeochemical cycling in the riparian-hyporheic ecotone. 2. The production of organic substances, such as cellulose and lignin, by riparian vegetation is an important factor influencing the pathways of microbial processing in the riparian zone. For example, anaerobic sediment patches, created by entrainment of allochthonous organic matter, are focal sites of microbial denitrification. 3. The biophysical structure of the riparian zone largely influences in-stream microbial transformations through the retention of organic matter. Particulate and dissolved organic matter (POM and DOM) is retained effectively in the hyporheic zone, which drives biofilm development and associated microbial activity. 4. The structure of the riparian zone, the mechanisms of POM retention, the hydrological linkages to the stream and the intensity of key biogeochemical processes vary greatly along the river continuum and in relation to the geomorphic setting. However, the present state of knowledge of organic matter metabolism in the hyporheic zone suggests that lateral ecological connectivity is a basic attribute of lotic ecosystems. 5. Due to their efficiency in transforming POM into heterotrophic microbial biomass, attached biofilms form an abundant food resource for an array of predators and grazers in the interstitial environments of rivers and streams. The interstitial microbial loop, and the intensity of microbial production within the bed sediments, may be a primary driver of the celebrated high productivity and biodiversity of the riparian zone. 6. New molecular methods based on the analysis of the low molecular weight RNA (LMW RNA) allow unprecedented insights into the community structure of natural bacterial assemblages and also allow identification and study of specific strains hitherto largely unknown. 7. Research is needed on the development and evaluation of sampling methods for interstitial micro-organisms, on the characterization of biofilm structure, on the analysis of the biodegradable matter in the riparian-hyporheic ecotone, on the regulation mechanisms exerted on microbiota by interstitial predators and grazers, and on measures of microbial respiration and other key activities that influence biogeochemical cycles in running waters. 8. Past experiences from large-scale alterations of riparian zones by humans, such as the River Rhine in central Europe, undeniably demonstrate the detrimental consequences of disconnecting rivers from their riparian zones. A river management approach that uses the natural services of micro-organisms within intact riparian zones could substantially reduce the costs of clean, sustainable water supplies for humans.     

Sources and seasonal patterns of dissolved organic matter (DOM) in the hyporheic zone

The hyporheic zone is a region underneath streambeds that integrates surface and groundwater. Although its location is central to biogeochemical linkages between the riparian zone, dissolved nutrients, and benthic biota, the seasonal quality and likely sources of dissolved organic matter (DOM) in the hyporheic zone are not well understood. To investigate DOM characteristics in the hyporheic zone, water from the surface and subsurface (at depths 20, 60, and 100 cm below the streambed) was sampled every 4 weeks from 2007 to 2008 in a third-order stream in southern Ontario. Using UV spectroscopy, measures of spectral slopes, aromaticity, and A ₂₅₄/A ₃₆₅ ratios (molecular weight) were obtained. Temporal changes in these measures were consistent with watershed processes such as shedding of leaf litter in the fall, and photochemical and biofilm influence in the spring and summer. The fluorescence index (a measure of relative DOM source) suggested that at the surface and in the downwelling zone, DOM microbial sources increased with depth in the sediment, regardless of the season. Excitation–emission matrices (EEMs) showed seasonally distinct, protein-like DOM components of bacterial origin that were stronger in the fall. Leachates from specific allochthonous DOM sources—leaf litter from Betula papyrifera (white birch) and Thuja occidentalis (white cedar)—and an autochthonous source, biofilm, were isolated and incubated with unfiltered surface water. EEMs from these leachates indicated that these sources could indeed help explain observed patterns of DOM in surface and subsurface waters. These results suggest that although DOM sources were relatively constant, biogeochemical processing within the hyporheic zone resulted a DOM pool that was temporally dynamic and altered the nature of organic matter transported downstream into lakes and rivers.     

Dissolved organic matter (DOM) concentration and quality in a forested mid-Atlantic watershed, USA

Understanding the quantity and quality of dissolved organic matter (DOM) in potential watershed sources is critical for explaining and quantifying the exports of DOM in stream runoff. Here, we examined the concentration and quality of DOM for ten watershed sources in a 12?ha forested catchment over a two-year period. DOM composition was evaluated for: throughfall, litter leachate, soil water (zero and tension), shallow and deep groundwater, stream water, hyporheic zone, and groundwater seeps. DOM quality was measured using a suite of optical indices including UV–visible absorbance and PARAFAC modeling of fluorescence excitation-emission matrices (EEMs). DOM concentrations and quality displayed a pronounced trend across watershed sources. Surficial watershed sources had higher DOM concentrations and more humic-like DOM with higher molecular weight whereas deeper groundwater sources were rich in % protein-like fluorescence. The greater % contribution of protein-like fluorescence in groundwater suggested that a larger fraction of groundwater DOM may be bioavailable. DOM for wetland groundwater was more aromatic and humic-like than that at the well-drained riparian location. Principal component analyses (PCA) revealed that the differences in surficial watershed compartments were dictated by humic-like components while groundwater sources separated out by % protein-like fluorescence. Observations from optical indices did not provide any conclusive evidence for preferential association of dissolved organic carbon (DOC) or dissolved organic nitrogen (DON) with any particular DOM quality pools.     

Evidence for key enzymatic controls on metabolism of Arctic river organic matter

Permafrost thaw in the Arctic driven by climate change is mobilizing ancient terrigenous organic carbon (OC) into fluvial networks. Understanding the controls on metabolism of this OC is imperative for assessing its role with respect to climate feedbacks. In this study, we examined the effect of inorganic nutrient supply and dissolved organic matter (DOM) composition on aquatic extracellular enzyme activities (EEAs) in waters draining the Kolyma River Basin (Siberia), including permafrost‐derived OC. Reducing the phenolic content of the DOM pool resulted in dramatic increases in hydrolase EEAs (e.g., phosphatase activity increased >28‐fold) supporting the idea that high concentrations of polyphenolic compounds in DOM (e.g., plant structural tissues) inhibit enzyme synthesis or activity, limiting OC degradation. EEAs were significantly more responsive to inorganic nutrient additions only after phenolic inhibition was experimentally removed. In controlled mixtures of modern OC and thawed permafrost endmember OC sources, respiration rates per unit dissolved OC were 1.3–1.6 times higher in waters containing ancient carbon, suggesting that permafrost‐derived OC was more available for microbial mineralization. In addition, waters containing ancient permafrost‐derived OC supported elevated phosphatase and glucosidase activities. Based on these combined results, we propose that both composition and nutrient availability regulate DOM metabolism in Arctic aquatic ecosystems. Our empirical findings are incorporated into a mechanistic conceptual model highlighting two key enzymatic processes in the mineralization of riverine OM: (i) the role of phenol oxidase activity in reducing inhibitory phenolic compounds and (ii) the role of phosphatase in mobilizing organic P. Permafrost‐derived DOM degradation was less constrained by this initial ‘phenolic‐OM’ inhibition; thus, informing reports of high biological availability of ancient, permafrost‐derived DOM with clear ramifications for its metabolism in fluvial networks and feedbacks to climate.     

Perspectives and predictions on the microbial ecology of the hyporheic zone

1. Studies of hyporheic microbial ecology have suggested an important role for hyporheic microbial processes in stream ecosystem functioning. Using evidence from microbial communities in other aquatic habitats, some predictions are made concerning the diversity of microbial types and microbial processes likely to occur in the hyporheic zone, and the relative importance of these various types to the hyporheic ecosystem. 2. It is predicted that the biofilm growth form of interstitial micro-organisms will create a variety of microniches, allowing coexistence of a great diversity of microbial types, and promoting the activity of some otherwise poor competitors. It is further predicted that the confluence of reduced groundwaters and aerobic surface waters will favour chemolithotrophic processes in the hyporheic zone, but that these will contribute significantly to hyporheic production only if surface water is very low in dissolved organic carbon, or the groundwater is extremely reduced, such as by the influence of riparian wetlands. A variety of anaerobic respiratory pathways, such as nitrate, ferric ion, sulphate and even methanogenic respiration will be employed in the hyporheic zone, with biofilm dynamics permitting these to occur even in aerobic sediments. Anaerobic pathways may account for a significant proportion of total hyporheic organic matter mineralization. 3. The role of fungi in hyporheic dynamics is, as yet, almost completely unstudied. However, it is expected that they will be important in breaking down buried particulate organic matter (POM), which may account for a large proportion of total stream POM. 4. Physicochemical conditions in hyporheic sediments appear to be highly heterogeneous, and this heterogeneity may be very important in the cycling of certain nutrients, especially nitrogen, which involves a series of steps requiring different conditions. 5. Various new techniques are now available by which biofilm dynamics and in situ microbial processes may be measured. Studies are recommended of intact microbial communities both at the microscale of the biofilm and at the scale of the heterogeneities occurring in hyporheic sediments. Studies are needed that measure actual rates of microbial processes under in situ conditions.     

Habitat Heterogeneity and Associated Microbial Community Structure in a Small-Scale Floodplain Hyporheic Flow Path

The Nyack floodplain is located on the Middle Fork of the Flathead River, an unregulated, pristine, fifth-order stream in Montana, USA, bordering Glacier National Park. The hyporheic zone is a nutritionally heterogeneous floodplain component harboring a diverse array of microbial assemblages essential in fluvial biogeochemical cycling, riverine ecosystem productivity, and trophic interactions. Despite these functions, microbial community structure in pristine hyporheic systems is not well characterized. The current study was designed to assess whether physical habitat heterogeneity within the hyporheic zone of the Nyack floodplain was sufficient to drive bacterial β diversity between three different hyporheic flow path locations. Habitat heterogeneity was assessed by measuring soluble reactive phosphorous, nitrate, dissolved organic carbon, dissolved oxygen, and soluble total nitrogen levels seasonally at surface water infiltration, advection, and exfiltration zones. Significant spatial differences were detected in dissolved oxygen and nitrate levels, and seasonal differences were detected in dissolved oxygen, nitrate, and dissolved organic carbon levels. Denaturing gradient gel electrophoresis (DGGE) and cell counts indicated that bacterial diversity increased with abundance, and DGGE fingerprints covaried with nitrate levels where water infiltrated the hyporheic zone. The ribosomal gene phylogeny revealed that hyporheic habitat heterogeneity was sufficient to drive β diversity between bacterial assemblages. Phylogenetic (P) tests detected sequence disparity between the flow path locations. Small distinct lineages of Firmicutes, Actinomycetes, Planctomycetes, and Acidobacteria defined the infiltration zone and α- and β-proteobacterial lineages delineated the exfiltration and advection zone communities. These data suggest that spatial habitat heterogeneity drives hyporheic microbial community development and that attempts to understand functional differences between bacteria inhabiting nutritionally heterogeneous hyporheic environments might begin by focusing on the biology of these taxa.     

Responses of microbial activity in hyporheic pore water to biogeochemical changes in a drying headwater stream

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Towards a budget of leaf litter decomposition in a first-order woodland stream

To construct a budget of carbon transformations occurring during leaf decomposition, alder leaves were placed in a woodland stream, later retrieved at weekly intervals, and rates of fungal and bacterial production, microbial respiration, and release of dissolved organic matter (DOM) and fine particulate organic matter (FPOM) were determined during short laboratory incubations. Carbon dioxide was the major decomposition product, explaining 17% of the microbially mediated leaf mass loss. DOM and FPOM were also important products (5 and 3% of total mass loss, respectively), whereas carbon flow to microbial biomass was low (2%). Fungal biomass in leaves always exceeded bacterial biomass (95–99% of total microbial biomass), but production of bacteria and fungi was similar, indicating that both types of microorganisms need to be considered when examining leaf decomposition in streams. Comparison of leaf mass loss in coarse and fine mesh bags revealed, in addition, that the shredder, Gammarus pulex, had a major impact on leaf decomposition in this study.     

A mixing model analysis of stream solute dynamics and the contribution of a hyporheic zone to ecosystem function*

1. We monitored streamwater and streambed sediment porewaters from White Clay Creek (WCC), SE Pennsylvania, for dissolved organic carbon (DOC), dissolved oxygen (DO) and conductivity to investigate organic matter processing within the hyporheic zone. Dissolved organic carbon and DO concentrations were higher in the streamwater than in the porewaters and, in many cases, concentrations continued to diminish with increasing depth into the streambed. 2. Hydrological exchange data demonstrated that the permeability of the stream bed declines with depth and constrains downwelling, effectively isolating porewaters >30 cm from streamwater. 3. End‐member mixing analysis (EMMA) based on conductivity documented a DOC source and DO sink in the hyporheic zone. We calculated hyporheic streambed DOC fluxes and respiration from the EMMA results and estimates of water flux. Based upon our calculations of biodegradable DOC entering the hyporheic zone, we estimate that DOC supports 39% of the hyporheic zone respiration, with the remaining 61% presumably being supported by entrained particulate organic carbon. Hyporheic respiration averaged 0.38 g C m^?2 d^?1, accounted for 41% of whole ecosystem respiration, and increased baseflow ecosystem efficiency from 46 to 59%. 4. Advective transport of labile organic molecules into the streambed concentrates microbial activity in near‐surface regions of the hyporheic zone. Steep gradients in biogeochemical activity could explain how a shallow and hydrologically constrained hyporheic zone can dramatically influence organic matter processing at the ecosystem scale.     

Effect of Native Vegetation Loss on Stream Ecosystem Processes: Dissolved Organic Matter Composition and Export in Agricultural Landscapes

Stream and river ecosystems are dependent on energetic inputs from their watersheds and thus shifts in land use from forest cover to agriculture will affect stream community composition and function. The disruption of forest-aquatic linkages alters the organic matter resources in agricultural streams. Dissolved organic matter (DOM) is the dominant form of organic matter in aquatic ecosystems, and a microbial energy source that is important for stream respiration. The concentrations and characteristics of DOM are regulated by both terrestrial (for example, terrestrial organic matter supply) and in-stream processes (for example, microbial respiration and periphyton production) that are influenced by land management. The effects of watershed land use and topographic, soil and climatic variables on DOM quantity (dissolved organic carbon concentration and load), source (terrestrial or in-stream) and quality (composition and lability) were measured in 14 streams across an agricultural land-use gradient. DOC concentration was positively correlated with watershed pasture cover and negatively correlated with watershed relief. No watershed variables were important correlates of DOC load. Stream DOM was primarily of terrestrial origin, but DOM in agricultural streams had a greater proportion of sources from in-stream sources. This may be due to reduced connection with riparian vegetation and increased in-stream primary production. We suggest that maintaining watershed tree cover greater than 52% and ensuring less than 10% of the length of riparian corridor is cleared for pasture could minimize changes to DOM composition. This is important to avoid flow-on effects for stream ecosystem processes that are mediated by DOM. Long-term DOM monitoring will be valuable for assessing the functional impacts of land-use change.     

Urban infrastructure influences dissolved organic matter quality and bacterial metabolism in an urban stream network

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Effects of human land use on the terrestrial and aquatic sources of fluvial organic matter in a temperate river basin (The Meuse River,Belgium)

The impact of human activities on the concentrations and composition of dissolved organic matter (DOM) and particulate organic matter (POM) was investigated in the Walloon Region of the Meuse River basin (Belgium). Water samples were collected at different hydrological periods along a gradient of human disturbance (50 sampling sites ranging from 8.0 to 20,407 km²) and during a 1.5 year monitoring of the Meuse River at the city of Liège. This dataset was completed by the characterization of the DOM pool in groundwaters. The composition of DOM and POM was investigated through elemental (C:N ratios), isotopic (δ¹³C) and optical measurements including excitation emission matrix fluorescence with parallel factor analysis (EEM–PARAFAC). Land use was a major driver on fluvial OM composition at the regional scale of the Meuse Basin, the composition of both fluvial DOM and POM pools showing a shift toward a more microbial/algal and less plant/soil-derived character as human disturbance increased. The comparison of DOM composition between surface and groundwaters demonstrated that this pattern can be attributed in part to the transformation of terrestrial sources by agricultural practices that promote the decomposition of soil organic matter in agricultural lands and subsequent microbial inputs in terrestrial sources. In parallel, human land had contrasting effects on the autochthonous production of DOM and POM. While the in-stream generation of fresh DOM through biological activity was promoted in urban areas, summer autochthonous POM production was not influenced by land use. Finally, soil erosion by agricultural management practices favored the transfer of terrestrial organic matter via the particulate phase. Stable isotope data suggest that the hydrological transfer of terrestrial DOM and POM in human-impacted catchment are not subject to the same controls, and that physical exchange between these two pools of organic matter is limited.     

氮沉降对毛竹林土壤可溶性有机质数量与光谱学特征的影响

中国亚热带是受氮沉降影响最严重的地区之一.土壤可溶性有机质(DOM)被认为是土壤有机质的重要指标,氮沉降可能通过改变微生物活性导致土壤DOM质量和数量的变化.本研究以亚热带毛竹林为研究对象,设置对照、低氮和高氮3个水平,进行为期3年的施氮处理,探究氮添加对土壤DOM含量、光谱学特征和微生物胞外酶活性的影响.结果表明: 与对照相比,施氮后土壤pH、可溶性有机碳、可溶性有机氮含量和芳香化指数无显著变化,而腐殖化指数随施氮量的增加显著增加,微生物酶活性也随着施氮量的增加呈现先升高后下降的趋势.傅里叶红外光谱结果显示,土壤DOM在7个区域的相似位置存在吸收峰,其中,1000～1260 cm^-1的吸收峰最强,表明施氮处理后,土壤中多糖类、醇类、羧酸类及酯类物质增加.三维荧光光谱结果表明,施氮处理后,土壤DOM结构有显著改变,表现在低分子物质如类蛋白质物质和微生物代谢产物减少,而高分子物质如类腐殖质物质显著增加.总的来说,施氮使得土壤氮与微生物需求相适应,促进微生物分解DOM中易降解的物质,土壤DOM结构更加复杂,短期氮沉降可能有利于土壤肥力的改善.     

Nutrient and microbiological characteristics of fine benthic organic matter in sediment settling ponds

1. Fine benthic organic matter (FBOM, particles <1 mm) was collected eight times in 1995 and 1996 from settling ponds located at the base of five catchments, and assayed for total C, N and P, extractable ammonium, mineralisable N, organic P, labile polysaccharides, denitrification potential, acetylene reduction and respiration rates, and β‐glucosidase and phosphatase activities. The five catchments (10–101 ha in size) are located in the Pacific North‐west of the United States. They contain either old‐growth forests dominated by Douglas‐fir (Pseudotsuga menziesii) and western hemlock (Tsuga heterophylla) or stands that were harvested 30 years ago and replanted with Douglas‐fir, with riparian zones dominated by red alder (Alnus rubra), bigleaf and vine maple (Acer macrophyllum; A. circinatum) and understory herbaceous plants. 2. C : N ratios were significantly higher, and mineralisable N, extractable ammonium and labile polysaccharides were all significantly lower, in FBOM from old‐growth catchment sediment than in FBOM from catchments containing harvested stands, showing that the chemical characteristics of FBOM were influenced by forest harvest. C and N concentrations were greatest in sediment from old‐growth catchments, but microbial activities (respiration, denitrification potential, phosphatase and β‐glucosidase) tended to be greater in sediment from the harvested catchments. 3. Levels of certain chemical components of harvested‐catchment FBOM were elevated relative to those found in old growth; specifically, organic and total P, extractable ammonium, mineralisable N and labile polysaccharides, suggesting that stream FBOM from harvested basins is more biodegradable than stream FBOM from old‐growth basins. 4. In addition to effects of past timber harvest on FBOM characteristics, there were also significant seasonal differences in both logged and unlogged catchments in all variables except mineralisable N, labile polysaccharides and acetylene reduction rates. 5. The results indicate that past timber harvest in five river basins influenced both composition of and seasonal fluctuations in fine benthic organic matter (FBOM) collected from stream sediments in settling ponds, suggesting a linkage between forest harvest and stream productivity. 6. Comparisons between seasonal patterns in stream and settling pond sediment FBOM characteristics suggested that the readily decomposable organic matter entering sediments during a storm event are rapidly transported and decomposed during their movement through the catchment basin. It also showed the validity of studying settling pond sediments as a surrogate for mountain stream sediments.     

Exoenzyme accumulation in epilithic biofilms

Although exoenzyme accumulation is often proposed as an explanation for the high metabolic activity of biofilms, little is known about the abundance, distribution and turnover rates of exoenzymes within these communities. To assess accumulation, epilithic biofilm samples were collected from a fourth-order boreal river and homogenized. The resulting particles were fractionated by size and each fraction was assayed for nine exoenzyme activities, chlorophyll, and ATP. In general, carbohydrase activities were not correlated with microbial biomass indicators; the largest pool of activity was in the aqueous phase (< 0.2 µm). Phenol oxidase, peroxidase, and phosphatase activities were largely particle-bound and often correlated with microbial biomass distribution. It was concluded that the epilithic biofilm matrix was effective at accumulating carbohydrase activity and that this accumulation may partially account for the metabolic resistance of epilithic biofilms to dissolved organic matter fluctuations.     

Fungal and Bacterial Colonization of Submerged Leaf Litter in a Mediterranean Stream

Microbial colonization dynamics of fungi and bacteria were analyzed in an intermittent Mediterranean forested stream using two different leaf substrata (Platanus acerifolia and Populus nigra). Results showed that fungal and bacterial biomass accumulation was stimulated on both leaves due to a flooding episode that increased dissolved inorganic nitrogen (DIN) and dissolved oxygen (DO) availability in the stream water. Leaf mass loss coincided with the parallel increase in microbial biomass and extracellular enzymatic activities after the flood event. Differences in litter quality favoured bacterial biomass accumulation and β‐glucosidase and cellobiohydrolase enzymatic activities in the soft Populus species. Microbial heterotrophs colonization of submerged leaf litter and organic matter use in Mediterranean‐type streams are modulated by environmental conditions, especially the hydrological variability. (© 2011 WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim)     

Intensified organic carbon dynamics in the ground water of a restored riparian zone

1. River restoration projects usually aim at improving the physical habitat for aquatic organisms. The extent to which biogeochemical processes and microbial activities are intensified in restored river reaches remains uncertain. 2. Here, we investigated the relationships between the distribution and composition of organic carbon (OC), bacterial secondary carbon production and extracellular enzymatic activity (EEA) in the ground water below a restored riparian section of the River Thur, Switzerland, relative to a channelised section. The spatiotemporal variability in the stable C isotopic ratio, dissolved OC polydispersity (the distribution of molecular mass in a mixture of molecules) as well as bacterial abundance, EEA and secondary production were investigated in different process zones. 3. At high river discharge, humic as well as low molecular weight amphiphilic substances infiltrated into the subsurface in a zone dominated by the pioneer plants Salix viminalis (willow bush). Concurrently, bacterial abundance, EEA and secondary carbon production increased at this location. 4. The willow plants leached bioavailable substrates into the ground water when the water table was high. The flood‐driven soil–groundwater coupling stimulated EEA and bacterial secondary production of the suspended groundwater bacterial community. 5. Establishing riparian habitat diversity adds hot spots of OC inputs during flood events, potentially providing valuable ecosystem services (e.g. degradation of organic pollutants) that accompany.     

Dynamic patch mosaics and channel movement in an unconfined river valley of the Olympic Mountains

1. River valleys resemble dynamic mosaics, composed of patches which are natural, transient features of the land surface produced by the joint action of a river and successional processes over years to centuries. They simultaneously regulate and reflect the distribution of stream energy and exchanges of sediment, wood and particulate organic matter between riparian and aquatic environments. 2. We determined the structure, composition, dynamics and origin of seven patch types at the reach scale in the Queets River valley in the temperate coastal forests of the Olympic Mountains, Washington (U.S.A.). Patch types included: (1) primary and (2) secondary channels; (3) pioneer bars; (4) developing and (5) established floodplains; and (6) transitional and (7) mature fluvial terraces. 3. Lateral channel movements strongly shape patch distribution, structure and dynamics. The primary channel moved laterally 13 m year^?1, on average from 1939 to 2002, but was highly variable among locations and over time. Mean lateral movement rates ranged from 1 to 59 m year^?1 and moving averages (2 km) ranged from 3 to 28 m year^?1 throughout the valley. 4. Each patch type exhibited characteristic vegetation, soil and accumulations of large wood. Pioneer bars contained peak stem density (69 778 stems ha^?1) and volume of large wood (289 m³ ha^?1). Mature fluvial terraces contained the highest mean stem (1739 m³ ha^?1) and canopy volume (158 587 m³ ha^?1). These patches also contained the most soil nitrogen (537 kg ha^?1) and carbon (5972 kg ha^?1). 5. Patch half‐life (the time required for half of the existing patches to be eroded) ranged from 21 to 401 years among forested patch types. Erosion rates were highest in pioneer bars (2.3% year^?1) and developing floodplains (3.3% year^?1), compared with only 0.17% year^?1 in mature fluvial terraces. New forests formed continually, as pioneering vegetation colonised 50% of the channel system within 18 years, often unsuccessfully. 6. In the Queets River, the structure, composition, and dynamics of the patchy riparian forest depends on the interplay between channel movements and biophysical feedbacks between large wood, living vegetation and geomorphic processes. The cycle of patch development perpetuates a shifting‐mosaic of habitats within the river valley capable of supporting diverse biotic assemblages.     

Denitrification in a nitrogen-limited stream ecosystem

Denitrification was measured in hyporheic, parafluvial, and bank sediments of Sycamore Creek, Arizona, a nitrogen-limited Sonoran Desert stream. We used three variations of the acetylene block technique to estimate denitrification rates, and compared these estimates to rates of nitrate production through nitrification. Subsurface sediments of Sycamore Creek are typically well-oxygenated, relatively low in nitrate, and low in organic carbon, and therefore are seemingly unlikely sites of denitrification. However, we found that denitrification potential (C & N amended, anaerobic incubations) was substantial, and even by our conservative estimates (unamended, oxic incubations and field chamber nitrous oxide accumulation), denitrification consumed 5–40% of nitrate produced by nitrification. We expected that denitrification would increase along hyporheic and parafluvial flowpaths as dissolved oxygen declined and nitrate increased. To the contrary, we found that denitrification was generally highest at the upstream ends of subsurface flowpaths where surface water had just entered the subsurface zone. This suggests that denitrifiers may be dependent on the import of surface-derived organic matter, resulting in highest denitrification rate at locations of surface-subsurface hydrologic exchange. Laboratory experiments showed that denitrification in Sycamore Creek sediments was primarily nitrogen limited and secondarily carbon limited, and was temperature dependent. Overall, the quantity of nitrate removed from the Sycamore Creek ecosystem via denitrification is significant given the nitrogen-limited status of this stream.