Q & A. [interview

Joel Rosenbaum was born and grew up in Massena, New York state, on the St Lawrence River border with Ontario, Canada. He received his undergraduate and PhD degrees from Syracuse University, and a Masters Degree in high school biology teaching at St Lawrence University. His PhD work was done with the protozoologist, George Holz Jr, and his post doctoral research on cilia and flagella was at the University Of Chicago with Frank Child and Hewson Swift. He has been at Yale University for 37 years where he has taught Cell Biology. His research has been on the synthesis and assembly of the proteins of cilia and flagella, showing that the flagellar axoneme assembles at the distal tip and that detachment of the flagella upregulates the genes for flagellar proteins. More recently his group has shown that this tip assembly process is facilitated by a rapid kinesin and cytoplasmic dynein-mediated motility underneath the flagellar membrane called ‘intraflagellar transport’. He is a runner with more than 20 marathons under his belt.     

An interview with Dr. Frank Slack on his highly cited paper published in Cell Cycle

Frank Slack received his B.Sc from the University of Cape Town in South Africa, before completing his Ph.D in molecular biology at Tufts University School of Medicine. He started work on microRNAs as a postdoctoral fellow in Gary Ruvkun’s laboratory at Harvard Medical School, where he co-discovered the second known microRNA, let-7. He is currently an Associate Professor in the Department of Molecular, Cellular and Developmental Biology at Yale University. The Slack laboratory studies the roles of microRNAs and their targets in development, disease and aging.     

From the laboratory to the patient and back--an interview with Marc Mareel. Interview by Marc E. Bracke

The career of Marc Mareel is a synthesis of scientific research and clinical activity. During his medical studies, he already made his first enthusiastic steps in research via experimental work on avian developmental biology. Later, during his training as a radiotherapist, he founded his own laboratory for experimental cancer research. There he built up his international reputation as a pioneer in invasion research. Although invasion is the hallmark of tumor malignancy, he also kept an open mind about invasion in non-cancer conditions, such as in placental behavior, developmental biology, immunology and parasitology. His contribution to our understanding of invasion mechanisms has been both technical and conceptual. A number of assays have been developed in his lab, such as the embryonic chick heart and collagen gel invasion models, that have been (and still are) useful for many other research teams. He also contributed to the discovery of a number of key elements in the process of invasion, such as the stromal influence (including its extracellular matrix) and the cadherin family of cell-cell adhesion molecules. Concerning metastasis formation, he developed the original concept that a number of interacting eco-systems are implicated, such as the primary tumor, regional lymph nodes, the bone marrow and the (pre)metastatic niches in distant organs. Since his retirement, Marc Mareel has continued to integrate clinical practice with research creativity. He favours the idea of translational research bringing the results of laboratory findings to medical applications, and exploiting the feedback to the laboratory. The team in the Laboratory of Experimental Cancer Research at Ghent University currently consists of about 25 collaborators, who continue to appreciate his inspiring ideas and suggestions.     

Direct physical formation of anatomical structures by cell traction forces. An interview with Albert Harris by Lev Beloussov

Albert Harris was educated at The Norfolk Academy, Norfolk, Virginia, USA (1961). He then earned a Batchelor of Arts Degree in Biology from Swarthmore College, in Pennsylvania, USA (1965), followed by a Ph.D. in Biology (1971) from Yale University, where his Dissertation Advisor was the great John Phillip Trinkaus. He held a Damon-Runyon Postdoctoral Fellowship in Cancer Research in 1970-72, under Michael Abercrombie, FRS, at the Strangeways Research Laboratory of Cambridge University, England. Then he accepted a position as Assistant Professor in the Zoology Department of the University of North Carolina at Chapel Hill, N.C. USA. In 1977, he was promoted to Associate Professor of Zoology, and in 1983 was promoted to Full Professor of Biology. In Oct.-Nov. 1991 he was honored to be Distinguished Visiting Professor of Zoology at the University of California at Davis.     

Q & A. Philip Ingham

Philip Ingham grew up in Liverpool and graduated from Cambridge University in 1977. He did his D.Phil in Developmental Genetics at Sussex University and postdoctoral work in Strasbourg, France before joining the laboratory of David Ish-Horowicz at the ICRF Mill Hill Laboratories. Here he applied the emerging technique of tissue in situ hybridisation to the analysis of the Drosophila segmentation genes. After a short spell at the MRC Laboratory of Molecular Biology in Cambridge, he rejoined the ICRF as a Research Scientist at the Developmental Biology Unit in Oxford. His group pioneered the analysis of the Hedgehog signalling pathway in Drosophila and in collaboration with the labs of Andy McMahon and Cliff Tabin at Harvard University, discovered the Hedgehog gene family in vertebrates. In 1996 he was appointed Professor of Developmental Genetics at the University of Sheffield where he has established the Centre for Developmental Genetics.     

Jonathon Howard.

Jonathon 'Joe' Howard (Fig. 1) is Group Leader and Director at the Max Planck Institute of Molecular Cell Biology and Genetics; he and his research group moved to Dresden, Germany, in July 2001. Howard received his PhD in neurobiology in 1983 from the Australian National University in Canberra. He did postdoctoral research there and also at the University of Bristol, UK, and at the University of California, San Francisco. In 1989, he joined the faculty at the University of Washington. His book "Mechanics of Motor Proteins and the Cytoskeleton" was published earlier this year. [interview by Mari N. Jensen]     

Q & A

Gregory A. Petsko is Gyula and Katica Tauber Professor of Biochemistry and Chemistry and Director of the Rosenstiel Basic Medical Sciences Research Center at Brandeis University. He did his undergraduate work at Princeton and his graduate work as a Rhodes Scholar at Oxford University. He held faculty positions at Wayne State University School of Medicine and MIT before moving to Brandeis in 1990. A structural biologist, he is best known for his work, together with his colleague Dagmar Ringe, on the structural basis of enzyme catalytic power and the role of protein dynamics in protein function. He writes a regular opinion column for the journal Genome Biology.     

Contribution of late Professor T. C. Tung to the experimental embryology of Amphioxus

Professor T. C. Tung (Fig. 1) was a prominent experimental embryologist in China. He was born in Jin County, Zhejiang Province, China in 1902. After he obtained his Bachelor's degree from the Department of Biology, Fudan University, Shanghai in 1927, he was appointed as a teaching assistant in that department until he moved to Belgium in 1930. He studied as a graduate student in Professors A. Brachet and A. M. Dalcq's laboratory at the Universite Libre de Bruxelles, Belgium and obtained his Doctor of Science degree there in 1934. During that period, he made two short working visits to the Institute of Marine Biology in France and took one training course at Cambridge University (UK). In 1934, he was invited to return to China as a Full Professor to teach at several Chinese universities, (Shandong University in Qingdao, Shandong Province; the National University in Nanjing; and Fudan University in Shanghai). He spent 1 year at Yale University (USA) between 1948 and 1949 as an invited scientist in a joint research project and finally returned to China in 1949. He was Chairman of the Department of Zoology, Shandong University in Qingdao (1949-1952), Vice-President of Shandong University (1952-1960), Director of the Marine Biological Institute, the Chinese Academy of Sciences (CAS) in Qingdao (1949-1958), Director of the Institute of Oceanology (CAS) in Qingdao (1959-1966), Director of the Institute of Zoology (CAS) in Beijing (1960-1962), member of CAS since 1955, Vice-Chairman of the Biological and Geographical Division of CAS (1955-1958), Chairman of the Biological Division of CAS (1959-1979) and Vice-President of CAS in Beijing (1978-1979). In spite of his administrative duties, he spent most of his life conducting bench work in his laboratories at the Institutes of Oceanology and Zoology, CAS, respectively, until he passed away in March 1979. Professor Tung's main research interest was with classic experimental studies on the determination of the egg axis and symmetry planes of fertilized eggs, early differentiation and organizing substances of egg cytoplasm, induction between embryonic cells and cytoplasm in embryogenesis, immunological studies on nuclear transplanted eggs, and cell fusion etc., in several types of animals. He conducted his experiments on a number of invertebrates (ascidians and Amphioxus) and vertebrates (fish and amphibians) by means of very skillful microsurgical operations and the nuclear transplantation method. Among these topics, his studies on the organization and developmental potency of Amphioxus eggs were unique. His important contribution to this research field involved not only establishing a practical method for collecting and using this rare animal for experimental purposes, but also clarifying controversy about the nature and early development of its eggs. He also provided conclusive evidence to determine its evolutionary position between invertebrates and vertebrates. The present article briefly reviews the main results obtained by Professor Tung and his colleagues on Amphioxus. Although their original articles were written both in Chinese and English, many international readers may not even know those original works because they were only published in scientific journals inside China from the 1950s. Comments and discussion on the experimental results of Amphioxus research by Tung's group and those from other earlier authors are also included.     

Q & A. [interview

Elaine and Gary Ostrander spent their youth in New Jersey and New York before heading to Nebraska for their teen years and eventually Washington State for High School and college, as their father moved around in library administration. Elaine was an undergraduate at the University of Washington, a graduate student at the Oregon Health Sciences University and a postdoc with James Wang at Harvard, studying DNA supercoiling. She next went to Berkeley, where she began the canine genome project, initiating the meiotic linkage map and working on human chromosome 21 at the Lawrence Berkeley National Labs. In 1993 she moved to the Fred Hutchinson Cancer Research Center where she is now a Member of the Divisions of Clinical Research and Human Biology. She is also an Affiliate Professor of Genome Sciences and Biology at the University of Washington, and heads the Program in Genetics at the Hutchinson Center. Gary completed his undergraduate degree in Biology at Seattle University, a M.S. degree at Illinois State University and a Ph.D at the University of Washington in Ocean and Fisheries Science. He went on to be a postdoc in the Department of Pathology at the University of Washington Medical School while being mentored by Senitroh Hakomori of the Fred Hutchinson Cancer Research Center and Eric Holmes of the Pacific Northwest Research Foundation. His work focused on using novel aspects of the biology of fishes to address fundamental questions about cancer. He subsequently held both faculty and administrative positions at Oklahoma State University. Since 1996, he has been at the Johns Hopkins University, where he currently holds academic appointments in the Departments of Biology and Comparative Medicine and is the Associate Provost for Research.     

A preliminary biography of Armand de Ricqlès (1938–), the great synthesizer of bone histology

Armand de Ricqlès has had a long, successful career. From his start as an Assistant in the University of Paris in 1961, he defended his doctoral thesis in 1963, became Maître-Assistant (Assistant Professor) in 1970 (tenured 1971), defended his “doctorat d’état” (habilitation thesis) in 1973, was nominated Professor in the University Paris 7, was promoted to first class (Full Professor) in 1987, and was finally nominated to the prestigious chair “Biologie Historique et Évolutionnisme” (Historical and Evolutionary Biology) of the Collège de France in 1996. He lectured on a wide range of topics, especially in comparative and evolutionary biology, and assumed important administrative responsibilities, including responsibility of various master's programs, leadership of the team “Formations squelettiques” (1973–2002; till Professor Jacques Castanet took over leadership of the team), involvement in various committees, and in organizing scientific meetings. He served on several editorial committees and was co-editor of the “Annales des Sciences Naturelles”, as well as co-editor-in-chief of the “Comptes Rendus Palevol”. His scientific research always emphasized bone histology, especially paleohistology, but he also made contributions to systematic paleontology, phylogenetics, history of paleontology, and biological nomenclature, in decreasing order of importance. He has so far published over 100 scientific papers and 120 semi-popular papers.     

Acrobat to academic: A sketch of the life and carrer of Frederick E. Samson,Jr.

Fred Samson's carrer began in osteopathy and show business. After service as a medic during World War II, he earned, a doctoral degree in physiology at the University of Chicago and joined the faculty of the University of Kansas in Lawrence in 1952. There he conducted pioneering research on cerebral energy metabolism and axoplasmic transport while inspiring a generation of students in the classroom and lab. During the mid 1960s, he began a fruitful and lasting collaboration with the Neurosciences Research Program and its founder, Francis O. Schmitt. In 1973 he became director of the Ralph Smith Mental Retardation Research Center in Kansas City, where he added metabolic mapping of the brain in relation to seizure activity and drug toxicity to his research accomplishments. He retired in 1989, still pursuing new problems and continuing to inspire colleagues with his enthusiasm for neurochemistry and the joy of science.Special issue dedicated to Dr. Frederick E. Samson.     

"Do not lose the winning games". To the 100th anniversary of M.E. Lobashev

Mikhail E. Lobashev (1907-1971), Head of the Department of Genetics and Breeding with the Leningrad (now, St. Petersburg) State University from 1957 to 1971, had traveled a long way from a homeless to an Honored Scientist of the Russian Federation. Lobashev was among the discoverers of chemical mutagenesis in Drosophila; he pioneered in connecting the mutation process and the repair of genetic material and developed the concept of signal inheritance. Through the entire Great Patriotic War, he served with the field forces, and defended his doctoral dissertation on the physiological hypothesis of mutation process in 1946 on the return to the University. In 1948, Mikhail Efimovich was discharged from the University, where he was the Dean of the Biological Faculty, as a Morganist. On his return to the University in 1957, Lobashev devoted all his energies to the restoration of genetic education in this country, wrote the first domestic genetic textbook in the post-Lysenko period, organized the research at the Department of Genetics and Breeding, and created the scientific school, whose representatives are still successfully working in the field of genetics.     

“Do not lose the winning games” to the 100th anniversary of M.E. Lobashev

Mikhail E. Lobashev (1907–1971), Head of the Department of Genetics and Breeding with the Leningrad (now, St. Petersburg) State University from 1957 to 1971, had traveled a long way from a homeless to an Honored Scientist of the Russian Federation. Lobashev was among the discoverers of chemical mutagenesis in Drosophila; he pioneered in connecting the mutation process and the repair of genetic material and developed the concept of signal inheritance. Through the entire Great Patriotic War, he served with the field forces, and defended his doctoral dissertation on the physiological hypothesis of mutation process in 1946 on the return to the University. In 1948, Mikhail Efimovich was discharged from the University, where he was the Dean of the Biological Faculty, as a Morganist. On his return to the University in 1957, Lobashev devoted all his energies to the restoration of genetic education in this country, wrote the first domestic genetic textbook in the post-Lysenko period, organized the research at the Department of Genetics and Breeding, and created the scientific school, whose representatives are still successfully working in the field of genetics.     

An international showcase of bioinformatics research

A report on the 11th International Conference on Intelligent Systems for Molecular Biology, Brisbane, Queensland, Australia, 29 June - 3 July 2003.     

The manzanar project: Towards a solution to poverty, hunger, environmental pollution, and global warming through sea water aquaculture and silviculture in deserts

Summary Dr. Gordon Sato is a former Editor-in-Chief of In Vitro Cellular and Developmental Biology, President of the Tissue Culture Association (now Society for In Vitro Biology), and Director of the W. Alton Jones Cell Science Center (now Adirondack Biomedical Center). He began pilot experiments on the Manzanar Project at test sites in the Salton Sea while a Professor of Biology at the University of California, San Diego and continued the project in the laboratory at the Cell Center in Lake Placid, NY and at Eritrean test sites during their war of independence. Since 1994, he spends up to 10 mo. per yr in Eritrea where he directs the Manzanar Project and trains young Eritrean scientists in the field in the area of what he refers to as “low-tech biotech.” The name of the Manzanar Project was inspired by the camp in California where Dr. Sato and his family were interned during World War II.—The Editor     

Jordan Raff

Jordan Raff is a Cancer Research UK funded group leader at the Wellcome/CR-UK Gurdon Institute in Cambridge, England. He obtained his PhD from the Department of Biochemistry at Imperial College, London, and he worked as a Post-doctoral fellow at the Department of Biophysics and Biochemistry, University of California, San Francisco. He is currently a Director of the Company of Biologists, and on the committee of the British Society of Cell Biology. He has studied centrosomes and cell division in fruit flies throughout his scientific career.     

THE THREE G's Meeting the Invertebrate Cell Culture Pioneers: Goldschmidt, Gaw, and Grace

It was my good fortune to meet personally the three invertebrate cell culture pioneers,Richard Goldschmidt,Zan-Yin Gaw,and Thomas D.C.Grace (Fig.1).In 1951 I met Goldschmidt at a symposium in Cold Spring Harbor,but I only knew that he was a prominent geneticist.I had no idea about his insect cell culture work at Yale University and daily contacts with Ross G.Harrison.In 1959 Zan Yin Gaw in Wuhan successfully cultured monolayers of silkworm cells for more than one year.I reported his breakthrough achievement at the 11th International Congress of Entomology in Vienna in 1960,but his work was completely ignored outside China.In 1982 Gaw invited me to Wuhan where he told me that he studied in the United States in the 1930s,working as postdoctoral scientist at the Rockefeller Institute,where he was daily meeting William Trager,and later at Yale University in the Osborn Laboratory,where he was inspired by Harrison.T.D.C.Grace worked in my laboratory at Rockefeller University during 1957 and 1958,then returned to CSIRO in Canberra,Australia.     

Dr. Haifan Lin. Interviewed by Han Lee and Rachel Rosenstein

Dr. Haifan Lin is professor of Cell Biology at Yale University, where he studies the mechanism of stem cell self-renewal in fruit flies, mice, and human cancer cells. Recently named director of the Yale Stem Cell Center, Dr. Lin has made seminal contributions to the stem cell field, most notably his demonstration of the stem cell niche theory using the fruit fly model, his discovery of the PIWI/AGO gene family that is essential for stem cell division in diverse organisms, and his recent finding of a group of small RNAs called PIWI-interacting, or piRNAs, which may play a crucial role in stem cell proliferation and germline development. Dr. Lin’s work on piRNAs was recognized by Science Magazine as a top scientific breakthrough of 2006. Recently, the Lin lab has begun exploring the role of these molecules in stem cell division and oncogenesis.     

Marshall J. Edwards: discoverer of maternal hyperthermia as a human teratogen

In a series of animal studies performed over a career spanning 40 years at the University of Sydney, Professor Marshall J. Edwards investigated the hypothesis that maternal hyperthermia during gestation can be teratogenic to the developing fetus. He is one of few investigators to have discovered a known human teratogen primarily through animal studies. In 1970 he earned his Ph.D. from the University of Sydney, writing a doctoral thesis entitled "A Study of Some Factors Affecting Fertility of Animals with Particular Reference to the Effects of Hyperthermia on Gestation and Prenatal Development of the Guinea-Pig." He went on to prove that hyperthermia-induced malformations in animals involve many organs and structures, particularly the central nervous system. Other defects include craniofacial anomalies, heart defects and hypodactyly, cataracts and coloboma, kyphoscoliosis, renal anomalies, dental agenesis, and abdominal wall defects. In a series of carefully planned and executed experiments, he demonstrated that the type of defect is related to the timing of the hyperthermic insult, and analyzed the underlying mechanisms. Cell death, membrane disruption, vascular disruption, and placental infarction were all implicated in causing embryonic damage. This special article reviews the scientific discoveries and personal philosophy of Marshall J. Edwards, the discoverer of maternal hyperthermia as a human teratogen.     

Downward causes and appropriate abstractions: Alternative argument for Noble's position

In his article of this issue, Denis Noble argues that causation can occur at and between any scales – rather than levels – in nature. I agree with this conclusion, but do not find his reasoning fully persuasive. I offer an independent but related argument for his position, which focuses on the role of the process of abstraction in identifying and understanding a phenomenon. My aim is to give the reader another way to think about causal talk within the framework of Systems Biology.