DNA Sequencing of Type Material Reveals Pneophyllum marlothii comb. nov. from South Africa and P. discoideum comb. nov. (Chamberlainoideae,Corallinales, Rhodophyta) from Argentina

A partial rbcL sequence from the type material of Spongites discoideus from southern Argentina showed that it was distinct from rbcL sequences of South African specimens to which that name had been applied based on morpho-anatomy. A partial rbcL sequence from an original syntype specimen, herein designated the lectotype, of Lithophyllum marlothii, type locality Camps Bay, Western Cape Province, South Africa, was identical to rbcL sequences of South African field-collected specimens assigned to S. discoideus. Based on phylogenetic analyses of rbcL and/or psbA sequences, both of these species belong in Pneophyllum and are transferred there as P. discoideum comb. nov. and P. marlothii comb. nov. The two species exhibit a distinct type of development where thick, secondary, monomerous disks are produced from thin, primary, dimerous crusts. Whether this type of development represents an example of convergent evolution or is characteristic of a clade of species within Pneophyllum remains to be resolved.     

Redescription of a brooding nemertine,Cyanophthalma obscura (Schultze) gen. et comb.n., with observations on its biology and discussion of the species of Prostomatella and related taxa*†

A new genus, Cyanophthalma, is erected with the type species Tetrastemma obscura Schultze, 1851. Cyanophthalma obscura is transferred from Prostomatella and is redescribed from observations of more than 300 living specimens and serial sections of 59 specimens from the northeast coast of North America. Comparison is made with serial sections of C. obscura from the Baltic and with serially sectioned specimens of three other described species of Prostomatella. Two of these, P. enteroplecta and P. merula, do not fit either genus and are provisionally placed in the aggregate genus Tetrastemma, whose present diagnosis they do fit. Prostomatella remains with only its type species, P. arenicola. Amphiporus cordiceps is also transferred to Cyanophthalma. Some of the characters that form the basis for classifying Monostilifera are assessed for phylogenetic significance. Cyanophthalma obscura in Nova Scotia lives in salt marshes. Young are brooded through the winter while ice covers most of the marsh.     

Variation of cuticular characters in the Nematomorpha: studies on Gordionus violaceus (Baird, 1853) and G. wolterstorffii (Camerano, 1888) from Britain and Ireland

Gordionus violaceus (Baird, 1853) and G. wolterstorffii (Camerano, 1888) are regarded as two species which are clearly separated by distinct cuticular patterns. A study of 59 specimens of these two species from Britain and Ireland revealed numerous transitional stages between the cuticular patterns that are regarded as being typical for each species. Variation was also found at the posterior end, but no character separates both species. Therefore, G. violaceus and G. wolterstorffii might represent one polymorphic species. Four specimens resembled G. violaceus but had a different cuticular pattern, including a second type of areole occurring in a pattern which has been named a megareolar pattern. This might represent a separate species, but a detailed determination relies upon further revisional work in the genera Gordionus, Parachordodes and Paragordionus.     

SYSTEMATICS OF GRATELOUPIA FILICINA (HALYMENIACEAE,RHODOPHYTA), BASED ON rbcL SEQUENCE ANALYSES AND MORPHOLOGICAL EVIDENCE,INCLUDING THE REINSTATEMENT OF G. MINIMA AND THE DESCRIPTION OF G. CAPENSIS SP. NOV.1

Grateloupia filicina (C. Agardh) Lamouroux, originally described from the Mediterranean Sea, has long been considered a textbook example of a marine red alga with a cosmopolitan distribution. An rbcL‐based molecular phylogeny, encompassing samples covering the entire geographic distribution of the species, revealed a plethora of “cryptic” species, whereby the presence of genuine G. filicina is limited to the Mediterranean basin. The phylogeny revealed a strong biogeographic imprint, with specimens from temperate regions resolved in clades composed of species inhabiting the same geographic region. Presence of widely divergent morphologies in the temperate clades indicated that several lineages have converged independently to a G. filicina‐type morphology. Tropical representatives are resolved in a single clade with very uniform G. filicina‐type morphology and pairwise sequence divergences that are lower than the average divergence observed in temperate lineages. This, combined with a lack of clear geographic structure among the tropical lineages, may indicate a more recent divergence with long‐range dispersal capacities. Violations to the biogeographic signal in temperate lineages seemed to be due to either inadequate taxonomy or recent introductions. Grateloupia minima P. & H. Crouan, a taxon placed in synonymy under G. filicina, is reinstated as a separate species distributed in the northeast Atlantic Ocean. Grateloupia capensis sp. nov. is described to accommodate specimens from South Africa with a G. filicina‐type morphology, and G. filicina var. luxurians is elevated to species status. Morphological and anatomical characters were put forward that support the distinctiveness of these three distinct species.     

The coralline genera Sporolithon and Heydrichia (Sporolithales,Rhodophyta) clarified by sequencing type material of their generitypes and other species

Interspecific systematics in the red algal order Sporolithales remains problematic. To re‐evaluate its species, DNA analyses were performed on historical type material and recently collected specimens assigned to the two genera Sporolithon and Heydrichia. Partial rbcL sequences from the lectotype specimens of Sporolithon ptychoides (the generitype species) and Sporolithon molle, both from El Tor, Egypt, are exact matches to field‐collected topotype specimens. Sporolithon crassum and Sporolithon erythraeum also have the same type locality; material of the former appears to no longer exist, and we were unable to PCR amplify DNA from the latter. A new species, Sporolithon eltorensis, is described from the same type locality. We have not found any morpho‐anatomical characters that distinguish these three species. No sequenced specimens reported as S. ptychoides from other parts of the world represent this species, and likely reports of S. ptychoides and S. molle based on morpho‐anatomy are incorrect. A partial rbcL sequence from the holotype of Sporolithon dimotum indicates it is not a synonym of S. ptychoides, and data from the holotype of S. episporum confirm its specific recognition. DNA sequences from topotype material of Heydrichia woelkerlingii, the generitype species, and isotype material of Heydrichia cerasina confirm that these are distinct species; the taxon reported to be H. woelkerlingii from New Zealand is likely an undescribed species. Type specimens of all other Sporolithon and Heydrichia species need to be sequenced to confirm that they are distinct species; morpho‐anatomical studies have proved inadequate for this task.     

Taxonomic contributions to Hapalidiales (Corallinophycidae,Rhodophyta): Boreolithothamnion gen. nov., Lithothamnion redefined and with three new species and Roseolithon with new combinations

Phylogenetic analyses of rbcL gene sequences and of concatenated rbcL, psbA, and nuclear SSU rRNA gene sequences resolved the generitype of Lithothamnion, L. muelleri, in a clade with three other southern Australian species, L. kraftii sp. nov., L. saundersii sp. nov., and L. woelkerlingii sp. nov. Cold water boreal species currently classified in Lithothamnion and whose type specimens have been sequenced are transferred to Boreolithothamnion gen. nov., with B. glaciale comb. nov. as the generitype. The other species are B. giganteum comb. nov., B. phymatodeum comb. nov., and B. sonderi comb. nov., whose type specimens are newly sequenced, and B. lemoineae comb. nov., B. soriferum comb. nov., and B. tophiforme comb. nov., whose type specimens were already sequenced. Based on rbcL sequences from the type specimens of Lithothamnion crispatum, L. indicum, and L. superpositum, each is recognized as a distinct species and transferred to the recently described Roseolithon as R. crispatum comb. nov., R. indicum comb. nov., and R. superpositum com. nov., respectively. To correctly assign species to these three genera based only on morpho-anatomy, specimens must have multiporate conceptacles and some epithallial cells with flared walls. The discussion provides examples demonstrating that only with phylogenetic analyses of DNA sequences can the evolution of morpho-anatomical characters of non-geniculate corallines be understood and applied at the correct taxonomic rank. Finally, phylogenetic analyses of DNA sequences support recognition of the Hapalidiales as a distinct order characterized by having multiporate tetra/bisporangial conceptacles, and not as a suborder of Corallinales whose tetra/bisporangial conceptacles are uniporate.     

PALEOZOIC LYCOPSID FRUCTIFICATIONS. III. CONSPECIFICITY OF BRITISH AND NORTH AMERICAN LEPIDOSTROBUS PETRIFACTIONS

A study was made of 30 apparently similar microsporangiate cone specimens of the lycopsid fructification Lepidostrobus found in coal balls of Middle Pennsylvanian age from Illinois and Kansas. None of these specimens was a complete cone, but at least 19 were large enough and well enough preserved to provide information regarding variation both within one cone and among several specimens. The data obtained substantiated the original assumption that all 30 specimens represented one species. Attempts to equate this one species with any of the similar, previously described North American taxa, Lepidostrobus coulteri, L. pulvinatus and Lepidocarpon magnificum-microsporangiate form, and the British taxon Lepidostrobus oldhamius, including the forms (α), (β), (γ) and pilosus, revealed that no significant differences existed among any of these taxa. Furthermore, all characteristics described for these taxa were referable to, and well within the range of variation of, the one species here analyzed. Differences among the taxa were found to represent only differences in maturation or normal variation. All these taxa are, therefore, conspecific and are assigned to one species which by priority is named Lepidostrobus oldhamius. The common association of the megasporangiate Lepidocarpon lomaxi with all these miorosporangiate cones, now recognized as representing the single taxon Lepidostrobus oldhamius, is strong evidence for the probability that Lepidocarpon lomaxi and Lepidostrobus oldhamius were produced by the same parent plant species.     

Molecular and phenotypic characterization of Leptospira johnsonii sp. nov., Leptospira ellinghausenii sp. nov. and Leptospira ryugenii sp. nov. isolated from soil and water in Japan

In a previous study, 50 of 132 soil samples collected throughout Japan were found to be Leptospira‐positive. In the present study, three strains identified in the collected specimens, three, E8, E18 and YH101, were found to be divergent from previously described Leptospira species according to 16S ribosomal RNA gene sequence analysis. These three strains have a helical shape similar to that of typical Leptospira and were not re‐isolated from experimental mice inoculated with the cultured strains. Upon 16S ribosomal RNA gene sequence analysis, E8 was found to belong to the intermediate Leptospira species clade and E18 and YH101 to belong to the saprophytic Leptospira species clade. Based on analyses of genome‐to‐genome distances and average nucleotide identity in silico using whole genome sequences and DNA–DNA hybridization in vitro, these isolates were found to be distinct from previously described Leptospira species. Therefore, these three isolates represent novel species of the genus Leptospira for which the names Leptospira johnsonii sp. nov., (type strain E8 ^T, = JCM 32515 ^T = CIP111620 ^T), Leptospira ellinghausenii sp. nov., (type strain E18 ^T, = JCM 32516 ^T = CIP111618 ^T) and Leptospira ryugenii sp. nov., (type strain YH101 ^T, = JCM 32518 ^T = CIP111617 ^T) are proposed.     

Taxonomic assessment of Ptychomitrium lepidomitrium and P. tortula (Bryopsida,Ptychomitriaceae)

Abstract

Ptychomitrium tortula (Harv.) A.Jaeger, P. lepidomitrium (C.Muell.) Schimp., P. rhacomitrioides Dixon and P. lindigii (Hampe) Jaeg. are similar in morphology by having scabrous calyptrae, sinuous basal leaf cells and crisped and contorted dry leaves. Studies of the type specimens of these species indicated that P. rhacomitrioides and P. lindigii are synonymous with P. tortula and P. lepidomitrium, respectively. Comparisons of the morphological features and distribution in detail showed that P. tortula and P. lepidomitrium are two distinctive species with geographical disjunction between Asia and Central and South America.     

To lump,to split or to maintain? Molecular taxonomy of the spotted barb Barbodes binotatus (Cyprinidae) and closely related species in Peninsular Malaysia

The taxonomic status of the Southeast Asian spotted barb, Barbodes binotatus (Teleostei: Cyprinidae), has puzzled researchers because of large but inconsistent geographic variation of its body melanin marking pattern. In this study, the authors appraise the differentiation of B. binotatus and two closely related species, Barbodes rhombeus and saddle barb, Barbodes banksi, in Peninsular Malaysia using mitochondrial and nuclear markers. The results of this study reveal that the Peninsular Malaysia populations of each of the three species form largely reciprocal monophyletic lineages that differ from each other by a minimum of 2.3% p-genetic distance using COI gene. Nonetheless, specimens of B. binotatus in Peninsular Malaysia are only distantly related to specimens of B. binotatus in Java (type locality). The monophyly of B. banksi is not refuted although specimens of Peninsular Malaysia are genetically distinct from those of Sarawak (type locality). The authors discuss alternative hypotheses whether each of these three valid species is a single species or each of the main five genetic lineages revealed in this study represents a distinct species. Preliminary investigations reveal a mito-nuclear discordance at one locality in Peninsular Malaysia where B. binotatus and B. banksi co-occur. Further studies should inform on the extent of reproductive porousness between these two lineages and others.     

PALEOZOIC LYCOPSID FRUCTIFICATIONS. I. LEPIDOCARPON PETRIFACTIONS

A reinvestigation of the 4 American species of Lepidocarpon described from petrifactions and of Illiniocarpon cadyi, also described from petrifactions, shows that they are all conspecific. When they, in turn, are compared with specimens of the British petrifaction L. lomaxi, no significant differences can be demonstrated. The criteria cited as diagnostic for the American petrifaction species of Lepidocarpon were found to fail as bases of discrimination when 400 specimens of Lepidocarpon found in coal balls of Pennsylvanian age were studied. Measurements and observations made of a sample size of 136 of these 400 specimens reveal a degree of variation compatible with that of a single species. All previously described American and British petrifaction taxa fall within (or not significantly beyond) this range of variability of a single species as determined from this sample. Additional evidence concerning the 3-dimensional sporophyll structure of this one species of Lepidocarpon and the configurations obtained by certain planes of section through it have served to demonstrate that Illiniocarpon cadyi is in reality a taxon based on sectioned structures of the sporophyll of this Lepidocarpon species. Under the rules of priority, this species of Lepidocarpon and the following are assigned to Lepidocarpon lomaxi: Illiniocarpon cadyi, Lepidocarpon ioense, L. magnificum (megasporangiate form), L. crenatum and L. palmerensis. On the basis of the morphological evidence, the British petrifaction described as Lepidocarpon wildianum is also equated with L. lomaxi.     

CONTRIBUTION TOWARD A MONOGRAPH OF RAMARIA. I. SOME CLASSIC SPECIES REDESCRIBED

Clavaria flavescens, C. flava, C. aurea, C. pallida, and C. rubella, species originally described by J. C. Schaeffer and currently placed in Ramaria, are reexamined and redescribed in modern terms following studies of original literature and specimens from type localities.     

Chelodesmid studies. XIII. A synopsis of the Brasilian tribe Strongylomorphini

The new diplopod tribe Strongylomorphini (fam. Chelodesmidae) is proposed for the two Brasilian genera Strongylomorpha and Brasilodesmus, characterized by the distal torsion of the solenomerite and form of the apical end of the prefemoral process, of the male gonopod. Strongylomorpha has been of uncertain status since 1897, but study of its type species shows the name to be a senior synonym of Erythrodesmus Silvestri, 1902, Neocamptomorpha Schubart, 1954, and Camptomorphoides Schubart 1962. Drawings of the gonopods are given for several old species, made from Iectotype specimens, and a list of the names considered referable to Strongylomorpha. The new species Brasilodesmus austrocrucis is described from Santa Catarina, Brasil.     

Systematics of Cladophora spp. (Chlorophyta) from North Carolina,USA, based upon morphology and DNA sequence data with a description of Cladophora subtilissima sp. nov.

Identification of Cladophora species is challenging due to conservation of gross morphology, few discrete autapomorphies, and environmental influences on morphology. Twelve species of marine Cladophora were reported from North Carolina waters. Cladophora specimens were collected from inshore and offshore marine waters for DNA sequence and morphological analyses. The nuclear‐encoded rRNA internal transcribed spacer regions (ITS) were sequenced for 105 specimens and used in molecular assisted identification. The ITS1 and ITS2 region was highly variable, and sequences were sorted into ITS Sets of Alignable Sequences (SASs). Sequencing of short hyper‐variable ITS1 sections from Cladophora type specimens was used to positively identify species represented by SASs when the types were made available. Secondary structures for the ITS1 locus were also predicted for each specimen and compared to predicted structures from Cladophora sequences available in GenBank. Nine ITS SASs were identified and representative specimens chosen for phylogenetic analyses of 18S and 28S rRNA gene sequences to reveal relationships with other Cladophora species. Phylogenetic analyses indicated that marine Cladophorales were polyphyletic and separated into two clades, the Cladophora clade and the “Siphonocladales” clade. Morphological analyses were performed to assess the consistency of character states within species, and complement the DNA sequence analyses. These analyses revealed intra‐ and interspecific character state variation, and that combined molecular and morphological analyses were required for the identification of species. One new report, Cladophora dotyana, and one new species Cladophora subtilissima sp. nov., were revealed, and increased the biodiversity of North Carolina marine Cladophora to 14 species.     

Gracilaria phuquocensis sp. nov., a new flattened Gracilaria species (Gracilariales,Rhodophyta), previously recognized as G. mammillaris,from the southern coast of Vietnam

Flattened Gracilaria species are widely distributed along the coasts of the South China Sea with more than 20 species recorded. Within the South China Sea, Gracilaria mammillaris has only been reported from Vietnam, but this species is likely restricted to the western Atlantic. This study aimed to reevaluate the taxonomic status of Vietnamese specimens of ‘G. mammillaris’ using combined morphological and molecular data. Our data clearly indicated that Vietnamese specimens were morphologically and genetically distinct from authentic G. mammillaris from the western Atlantic, and also other described flat Gracilaria species. We, therefore, propose that specimens from Vietnam originally identified as G. mammillaris be designated as a new species, Gracilaria phuquocensis sp. nov. Morphologically, G. phuquocensis can be distinguished from other flat Gracilaria species by its small thallus size, narrower blades, many medullary layers, abundant basal nutritive filaments within mature cystocarps, and tetrasporangial nemathecium. Our rbcL sequence analyses showed that the new species was sister to Gracilaria rhodymenioides from Thailand, and these two species formed a clade with cylindrical Gracilaria species. Our study contributes to clarification of the taxonomic status of misidentified specimens attributed to the flattened Gracilaria species in the South China Sea.