Use of confocal laser scanning microscopy on soil thin-sections for improved characterization of microbial growth in unconsolidated soils and aquifer materials

Confocal laser scanning microscopy (CLSM) was utilized to examine samples from an aquifer microcosm that was used to investigate microbially mediated losses in hydraulic conductivity. Samples were fixed, dehydrated and dried to prepare the biological material in a fashion similar to that used previously for viewing under the scanning electron microscope. Then, samples were prepared as thin-sections by employing soil micromorphological techniques. Serial images generated by the CLSM technique were visualized using computer three-dimensional rendering software. Results from the CLSM technique were compared with simple fluorescence microscopy of thin-sections and scanning electron microscopy (SEM) of samples from the microcosm. Computer visualization of serial sections with the CLSM technique provided images on a submicron scale in three dimensions. SEM has a much higher resolution, on a nanometer scale, but the results are not three dimensional. Artifacts associated with thin-section preparation are minimal for natural porous media composed mostly of sand, such as aquifer materials. Also, CLSM images are affected minimally by changes to biological material due to sample preparation, whereas artifacts associated with SEM images are very prominent, due to the higher magnification and resolution. CLSM of thin-sections and SEM are very powerful methods for viewing microbial growth in natural porous media, but CLSM is preferable because it allows three-dimensional visualization and measurements of cells and aggregates with few artifacts.     

Two-dimensional spectrophotometry with high spatial and temporal resolution by digital video techniques and powerful computers

A two-dimensional spectrophotometer having a spatial raster resolution of 512 X 512 picture elements with 256 grey levels and a time resolution of 30 images per min is assembled by combination of digital video techniques and a powerful computer system. The instrument is applied to the analysis of pattern formation processes in cytoplasmic media.     

The use of interactive image analysis for demonstrating coexistence

A new approach to establish morphological coexistence using computerized image analysis is described. With this technique, the coexisting pattern in two images is revealed by recording the images via a TV camera on a Zeiss/Kontron IBAS interctive image analyzer. Using an arithmetic or a Boolean algebraic operation, the computer then directly compares the respective patterns obtained for different neuroactive substances and shows the resulting coexisting cells (in white) on a TV-monitor. Also non-coexisting system can be showed in various shades of grey. The method allows for a non-biased, rapid and exact scanning of tissue sections where a possible coexistence may be present.     

Automatic leukocyte classification using cytochemically stained smears.

A leukocyte classification algorithm suitable for automated differential counting has been developed for blood smears stained with a new three-component cytochemical stain which has relatively narrow absorption bands centered at 460, 540 and 640 nm, respectively. The classification procedure is the result of a pattern recognition experiment using a sample of 223 leukocytes distributed evenly over the five normal cell types. The basic data for each cell were three digital microscopic images obtained with narrow band illumination at the above central wavelengths using a TV-digitizer system interfaced to a PDP-15 computer. The classification algorithm involves a sequential decision procedure utilizing five pattern features computed from the intensity histograms of the green and blue digital images. Thus the number of arithmetic operations and the number of computer memory words necessary to perform the classification into one of the five normal white blood cell types are both proportional to n where n is the number of gray levels into which the intensity scale is divided. In this experiment, n equals 256. Comparison of our results with work of others on smears prepared with Romanowski-type stains indicates that such narrow-band, spectrally well separated cytochemical multiple stains can permit the use of algorithms which are approximately ten times faster.     

A Microautoradiographic Study of Auxin Transport in the Stem of Intact Pea Seedlings (Pisum sativum L.)

Soluble-compound microautoradiography was used to determinethe distribution of radioactivity in transverse sections ofintact dwarf pea stems (Pisum sativum L.) following the applicationof [³H]IAA to the apical bud. Near the transport front labelwas confined to the cambial zone of the axial bundles, includingthe differentiating secondary vascular elements. Fully differentiatedphloem and xylem elements remained unlabelled and no radioactivitywas detected in the leaf or stipule traces. Similar resultswere obtained in experiments with Vicia faba L. plants. Nearerthe labelled apical bud of the pea there was a more generaldistribution of label and evidence was found of free-space transportof radioactive material in the pith. When [³H]IAA was applied to mature foliage leaves the greatestconcentration of label was found in the differentiated phloemelements of the appropriate leaf trace and in the phloem ofthe adjacent axial bundles. Both basipetal and acropetal transportwas detected in this case. These results are consistent with the conclusions drawn fromearlier transport experiments which indicated that in the intactplant the long-distance basipetal transport of auxin from theapical bud takes place in a system which is separated from thephloem transport system and suggests that the vascular cambiumand its immediate derivatives may function as the normal pathwayfor the longdistance movement of auxin in the plant. The physiologicalsignificance of such a transport system for auxin is discussed.     

Simple method for quantification of fast plasma membrane movements.

We present a method for the quantification of the fast plasma membrane movements that are involved in ruffling, blebbing, fast shape change, and fast translocation. The method is based on the Kontron Vidas image analysis computer program. Video images from cells viewed through an inverted microscope were transmitted to the computer. The procedure was as follows: 4 consecutive video images were averaged (image 1); 28 s later a second set of 4 video images was averaged (image 2); image 2 was subtracted from image 1 and the grey level of each pixel of the resulting image was increased with 128 grey level units, resulting in the subtraction image, showing a uniform grey background speckled with brighter and darker spots corresponding to areas of movement. These spots were discriminated and turned into white objects against a black background. Interactive editing was used to delete artefacts that resulted from floating debris. The total area of the discriminated objects was measured, and the parameter motile area in micron2 per cell was calculated. We have applied our method to the study of motility induced in epithelial cell lines by the tumor promoter 12-O-tetradecanoyl-phorbol-13-acetate and by epidermal growth factor.     

Visualization of multidimensional spectra in flow cytometry.

Flow data from a cell sorter have been processed by hardwired circuits which include amplification, discrimination, coincidence requirements, peak sensing and holding, A-D conversion, and a computerized pulse height analysis with storage of the spectra obtained. Two dimensional spectra can be stored directly in memory, on tape and disk. Three and four parametric cellular events can be recorded on line during the flow measurement in a sequential mode on tape for subsequent recall. Simple processing of these data can be performed for displaying of two dimensional projections from these multidimensional spaces based on threshold conditions for the remaining parameters. Interfaced transmission of the stored data to a large scale computer enables more sophisticated data analysis. Data reduction by means of a multidimensional probability analysis has been carried out in order to transfer the spectra to a computerized picture system for display. This system creates perspective two-dimensional images from a three-dimensional data space. Frequency can be converted into grey levels. Hard copy in color (color as the third dimension and color intensity as frequency) simplifies the visualization of multiparametric flow data sets.     

Electron microscope analysis of tissue components identified and located by computer-assisted 3-D reconstructions: ultrastructural segmentation of the developing human proximal tubule

A method is described for ultrastructural analysis of renal tubules after precise identification of tubule segments by computerized 3-D reconstruction at the light microscope level. Semithin serial sections were cut of entire nephrons and 3-D coordinate information was obtained by digitization of tubule cross sections in the semithin sections. With the aid of the computer the tubule axis was traced from one section to the other. Precise lengths and positions of the tubules in three dimensions were calculated and stereoscopic images generated. The method was used to analyze the 3-D structure of developing human nephrons, and the ultrastructural development of the proximal tubule. Ultrastructural segmentation of the proximal tubule was demonstrated in the human fetal nephron in developmental stage IV.     

录象机在生物组织连续切片的计算机三维重建系统中的应用

录象机(Video Tape Recorder)作为输入、输出设备,应用于“生物组织连续切片的计算机三维重建系统”中,其效果是令人满意的.由于研制的“同步再生”单元(Sync RecoveryUnit)有效地消除了静放噪声,从而使Cromemco微型计算机的图象输入接口SDD(Super DazzlerDigitizer)能够稳定地逐帧采集录象机输出的静止图象.录制并编辑计算机三维重建后的生物组织显微结构的空间旋转视图,使其在录象机的监视器上显示得更生动、逼真,更有体视感;还可脱离主机在任何场合演示重建结果.本文还就录象机在生物医学序列图象分析中的应用前景进行了讨论.     

Nuclear volume estimation using different sampling, measurement and calculation methods

OBJECTIVE: To study the reliability of volume parameter measured on tissue sections through different sampling, measurement and calculation methods. STUDY DESIGN: The largest nuclear profile image under a 100x, NA 1.30 oil immersion objective of primary spermatocytes and spherical spermatoblasts on 11-micron-thick seminiferous tubule sections and tissue images, under a 20x objective, on 4-micron sections were captured. Their volumes were measured and calculated by the five methods provided by the Technology for Image and Graphics Engineering Research cell image analysis system. RESULTS: The nuclear volumes obtained by nucleator and area equivalent diameter on the largest nuclear profile image were almost the same, including binary images by automated and manual interactive nucleator and grey scale images only by the latter. Nuclear volumes, calculated by random Feret diameter and equivalent diameter of the perimeter, the minimal circumference of the largest nuclear profile binary image, were obviously larger than those of the nucleator and area equivalent diameter. Due to different-sized nuclear slices entrapped in the same section, those nuclear volumes from the seminiferous tubule tissue images were strikingly lower than that of the largest nuclei profile image. The shape factors of primary spermatocytes and spherical spermatoblast nuclei under 100x and 20x objectives were approximately the same. CONCLUSION: The sample preparation, sampling methods and calculation formulas suitable to nuclear form are necessary to obtain reproducible volume parameters.     

A semiautomated system for measurement of 96 simultaneous spectrophotometric enzyme assays

A semiautomated system for spectrophotometric measurement of enzyme activity is described. In comparison to a 1-ml reaction volume monitored continuously by a conventional spectrophotometer, this system requires 1/10 to 1/100 the volume of sample, and 1/8 to 1/4 the time for measurement and computation of 96 enzyme assays. The system hardware consists of a 96-well platereader interfaced to a personal computer. Absorbances of 96 reactions are measured at timed intervals. These data are transmitted electronically from the platereader to the computer through the modem port using a modem program. The reaction rates are computed from the timed absorbance readings using a spreadsheet program. Three enzyme assays are presented, but the method has been used for several other assays and is applicable to many spectrophotometric rate assays. Many laboratories currently possess one or both of the two major components of the relatively inexpensive system described.     

Early Effects of Auxin on Growth and Nucleic-Acid Metabolism in Sterile Pea Stems

A method of obtaining sterile pea stem sections has been developedand the effect of auxin on RNA metabolism has been investigatedusing aseptic techniques. Auxin rapidly stimulated ³²P-incorporationinto ethanol precipitated nucleic acid preparations. Subsequentexperiments showed that the bulk of the ³²P in these preparationswas present in a non-nucleic acid component which could be separatedfrom the nucleic acids by combined CM cellulose-Sephadex chromatography.This method of separation was used to show that auxin treatmentdoes not appear to stimulate RNA synthesis before stimulatingextension growth.     

Wideband acoustic energy studies of pulmonary airways

The impulse response of the pulmonary system has been measured by exciting the system with wideband acoustic noise introduced through the mouth. The transmitted sound is detected using microphones placed on the patient's back at appropriate locations. A specially designed analog correlator is used to obtain the impulse response of the pulmonary system through cross-correlation techniques. Uniquely characteristic responses have been obtained from smoking and nonsmoking patient groups.     

Computer-assisted image analysis of the distributions of peptidergic terminals in the central nucleus of the amygdala: A preliminary study

When viewed under dark-field illumination, peptidergic terminals in sections stained by the Sternberger PAP immunocytochemical method are seen as individual points of light. Under high magnification, the degree of brightness of various areas of immunoreactive terminals is seen to be a function of the density of terminals in these areas. By analyzying the relative brightness of the immunostained central nucleus of the amygdala (CNA) with an EyeCom II PDP-$\text{11}\text{34}$ image analysis system, we have obtained a relative evaluation of the density distribution of neurotensin (NT)-, substance P (SP), VIP-, angiotensin II (AII), m-enkephalin (m-ENK) and somatostatin (SS)-immunoreactive terminals in terms of normal morphology and following a brain lesion. The EyeCom II system divides the presented image into 307200 picture elements (pixels) and assigns one of 256 grey values to the average brightness with each pixel. We have aggregated the grey level frequencies into 5 levels where level 1 corresponds to the highest terminal density and level 5 to the lowest density. At level 1, only NT- and VIP-immunoreactive terminals occupy a significant percentage of the cross-sectional area of the CNA (20%). About 15% of the area of the CNA has VIP terminals with level 5 density. The distributions of the top 20% of the terminal density range of NT, SP, AII and VIP support a classical medial/lateral division of the nucleus. The distribution of the same range of SS- and ENK terminals suggests a dorsoventral division of the CNA. A preliminary study indicates that comparison of grey level frequency histograms generated by image analysis from homologous lesioned and unlesioned sections of the CNA can yield useful information regarding post-lesion changes in the distribution of immunoreactive terminals.     

Algal 14C and total carbon metabolisms. 1. Models to account for the physiological processes of respiration and recycling

A consistent set of equations has been written to describe thenet rate of algal ¹⁴CO₂ uptake (and where appropriate respirationand photosynthesis) which take into account separately complicationsdue to respiration of the labelled photosynthetic products andthe recycling of respiratory CO₂. Written specifically intothe equations is the concept of ‘new’ and ‘old’carbon, the coefficient q is used in the respiration model toallow for the differential respiration of organic material fromthe ‘new’ and ‘old’ carbon pools. Analyticalintegrals have been found for respiration and recycling models,and the behaviour of the models studied over periods of 12 h(i.e. up to 70% of the intrinsic generation time). The rateconstant for respiration has a greater effect on the behaviourof the recycling than the respiration model. Over short timecourses (up to 30% of the intrinsic generation time), the effectsof respiration and recycling on net ¹⁴CO₂ uptake are quite distinct,especially at high P/R ratios, and not complicated by assumptionsover the value of q. Although the value of q will have a time-dependentsecondary effect on the modelled total carbon-specific respirationrate, this was found not to give rise to major problems of interpretation.Beyond 50% of the intrinsic generation time, the separate treatmentof respiration and recycling in the models becomes less satisfactory.It was concluded that the present equations, which are not constrainedby mass balance considerations, would not be appropriate fora model that combines the two processes. The pattern of recyclingat low P/R values is identified as one of the major uncertaintiesin producing models of ¹⁴C uptake. The effect of the releaseof dissolved organic material can be anticipated in a generalway. The models have been used to define an experimental strategyto establish the separate effects of respiration and recyclingon the time course of net ¹⁴C uptake. The initial rates givethe clearest resolution of the two processes and it would appearthat with photosynthetic rates in the region of 1 day^–1,incubation periods up to 3–6 h would be suitable to determinethe importance of recycling in controlling net ¹⁴C uptake. Withthe present models, only in the absence of recycling could theeffect of respiration be studied and the value of q established.     

Spatial distribution of oil in groundnut and sunflower seeds by nuclear magnetic resonance imaging

Abstract. The nuclear magnetic resonance imaging technique has been used to obtain images of different transverse and vertical sections in groundnut and sunflower seeds. Separate images have been obtained for oil and water components in the seeds. The spatial distribution of oil and water inside the seed has been obtained from the detailed analysis of the images. In the immature groundnut seeds obtained commercially, complementary oil and water distributions have been observed. Attempts have been made to explain these results.     

An Airlift Column Bioreactor Suitable for Large-Scale Cultivation of Plant Cell Suspensions

This paper describes the construction and operation of a laboratory-scale10 dm³ column bioreactor which has been used successfully forthe growth of plant cells, and has subsequently been scaledup to 85 dm³. Key words: Airlift, Bioreactor, Growth, Plant cells, Large scale     

AN ELECTRONIC TECHNIQUE FOR MONITORING THE TEMPORAL ASPECTS OF ACOUSTIC SIGNALS OF CAPTIVE ORGANISMS

ABSTRACT

We introduce an inexpensive electronic technique for monitoring the temporal aspects of any captive animal's acoustic signals. The electronic apparatus, attached to a data acquisition unit and personal computer, compares microphone output to a pre-set level and stores calling/non-calling data to disk. Total time calling and temporal signaling patterns of up to 256 individuals can be monitored for indefinite lengths of time. Sampling rate is adjustable, with a maximum rate of 6 samples/microphone/second. The capabilities of the system are illustrated with the field cricket Gryllus integer. Temporal aspects of acoustic signaling are discussed in terms of monitoring time scale and recognition of individual variation, energetics research, and hypothesis testing of the costs and benefits associated with mating success and predation.     

A new method of preparing embeddment-free sections for transmission electron microscopy: applications to the cytoskeletal framework and other three-dimensional networks

Diethylene glycol distearate is used as a removable embedding medium to produce embeddment -free sections for transmission electron microscopy. The easily cut sections of this material float and form ribbons in a water-filled knife trough and exhibit interference colors that aid in the selection of sections of equal thickness. The images obtained with embeddment -free sections are compared with those from the more conventional epoxy-embedded sections, and illustrate that embedding medium can obscure important biological structures, especially protein filament networks. The embeddment -free section methodology is well suited for morphological studies of cytoskeletal preparations obtained by extraction of cells with nonionic detergent in cytoskeletal stabilizing medium. The embeddment -free section also serves to bridge the very different images afforded by embedded sections and unembedded whole mounts.     

Confocal microscopy of hair

Confocal microscopy is an excellent method for studying the localization of fluorescent stains. Used in this way, superior 3D images can be obtained from multiple optical sections with very shallow depth of field. The main advantage of this technique is that the sample is not damaged. We have taken serial confocal sections of hair and via specific image enhancement routines have obtained high-quality 3D images enabling the visualization of cuticle scale and its pattern of distribution. This has been done on various types of hair: bleached, permed and in certain pathological conditions. This first step will allow us to characterize the hair surface in terms of its roughness, and the distribution and form of cuticular scale, parameters that have potential in the assessment of dermocosmetic efficacy.