The rate of allelism of lethal genes in a geographically structured population

The expected rate of allelism, E[I(x)], of lethal genes between two colonies with distance x in a structured population is studied by using one- and two-dimensional stepping-stone models. It is shown that E[I(x)] depends on the magnitude of selection in heterozygous condition (h), the rate of migration among adjacent colonies (m), the number of loci which produce lethal mutations (n) and the effective population size of each colony (N).——E[I(x)] always decreases with distance x. The rate of decrease is affected strongly by the magnitude of m. The rate of decrease is faster when m is small. E[I(x)] also decreases with increasing N and n. The effect of h on E[I(x)] is somewhat complicated. However, E[I(0)] is always smaller when h is small than when it is large.——For large x, the following approximate formulae may be obtained: (see PDF) where q and Var (q) are the mean and the variance of gene frequencies in each colony, t is approximated as t=h, (see PDF), -h for the partially recessive, completely recessive, and overdominant lethals, respectively, and C₀ is a function of m and t. It is clear that E[I(x)] declines exponentially with x in a one-dimensional habitat. The decrease E[I(x)] is faster in a two-dimensional habitat than in a one-dimensional habitat. The present result is applied to some of the existing data and the estimation of population parameters is also discussed.     

Four new species of the mite genus Bakerdania (Heterostigmata, Pygmephoridae) from Russia

Four new mite species (Bakerdania palustris, B. taymyrica, B. mycophila, and B. littoralis) from different regions of Russia are described. Bakerdania palustris sp. n. is most similar to B. janetscheki Mahunka, 1970, differing in the presence of adjoining bases of setae ps ₂ and ps ₃ (in B. janetscheki, ps ₃ is separated from ps ₂) and also by shorter smooth setae 2b (in B. janetscheki, setae 2b are serrate and distinctly longer). Bakerdania taymyrica sp. n. is most similar to B. heisseli Mahunka, 1970, differing in the presence of the brush-like setae 1a (that are trichoid and serrate in B. heisseli); shorter setae tc′ on the tibiotarsus I, that are almost half as long as setae pl′ (in B. heisseli, tc′ is much longer, nearly as long as pl′). Bakerdania mycophila sp. n. is most similar to B. racki (Mahunka, 1967), differing in the presence of significantly longer ventral setae and the separate solenidion ω₁ (in B. racki, the latter is fused with the tibiotarsus). Bakerdania littoralis sp. n. is most similar to B. racki, differing from the latter in the shape of setae 1a, 2a, 3a, 3b, 4a that are basally thickened; in the shape of setae ps ₁ (trichoid in B. racki); and in the presence of the non-furcated setae 1b (in B. racki, these setae are bifurcate).     

Srs2 and RecQ homologs cooperate in mei-3-mediated homologous recombination repair of Neurospora crassa

Homologous recombination and post-replication repair facilitate restart of stalled or collapsed replication forks. The SRS2 gene of Saccharomyces cerevisiae encodes a 3′–5′ DNA helicase that functions both in homologous recombination repair and in post-replication repair. This study identifies and characterizes the SRS2 homolog in Neurospora crassa, which we call mus-50. A knockout mutant of N.crassa, mus-50, is sensitive to several DNA-damaging agents and genetic analyses indicate that it is epistatic with mei-3 (RAD51 homolog), mus-11 (RAD52 homolog), mus-48 (RAD55 homolog) and mus-49 (RAD57 homolog), suggesting a role for mus-50 in homologous recombination repair. However, epistasis evidence has presented that MUS50 does not participate in post-replication repair in N.crassa. Also, the N.crassa mus-25 (RAD54 homolog) mus-50 double mutant is viable, which is in contrast to the lethal phenotype of the equivalent rad54 srs2 mutant in S.cerevisiae. Tetrad analysis revealed that mus-50 in combination with mutations in two RecQ homologs, qde-3 and recQ2, is lethal, and this lethality is suppressed by mutation in mei-3, mus-11 or mus-25. Evidence is also presented for the two independent pathways for recovery from camptothecin-induced replication fork arrest: one pathway is dependent on QDE3 and MUS50 and the other pathway is dependent on MUS25 and RECQ2.     

Fixation probabilities and effective population numbers in diploid populations with overlapping generations

A finite diploid population, observed at times t = 0, 1, 2,…, is studied. An individual is said to be in age group i at time t if its age is between i and i + 1 units at that time, where i ? 1. It is assumed that the number of individuals in a particular age-sex class is the same for every t and that the probability that a male offspring was produced by a mating of a male in age group i and a female in age group j is p_ij^m (with a corresponding probability p^f_ij for a female offspring), regardless of when the individual is born. The probability of ultimate fixation of an allele A₁ and the inbreeding effective number, for large populations, is calculated under the further assumptions that A₁ is neutral and that mating is random, given the ages of the mates.     

A neotype designation for the bone-skipper Centrophlebomyia anthropophaga (Diptera,Piophilidae, Thyreophorina), with a review of the?Palaearctic?species?of Centrophlebomyia

The European bone-skippers (Diptera: Piophilidae: Thyreophorina), long considered extinct, have recently been the object of much interest by dipterists after their unexpected rediscovery. Considerable faunistic work has been done on these flies in recent years. However, some nomenclatural and taxonomic issues still require attention. A neotype is designated for Thyreophora anthropophaga Robineau-Desvoidy, 1830 (now in the genus Centrophlebomyia Hendel, 1903) to fix the identity of this nominal species. Centrophlebomyia anthropophaga is recognized as a valid species. It is described and illustrated in detail, and information on its preimaginal instars is provided for the first time. Four Palaearctic species of Centrophlebomyia are recognized and reviewed and a key is provided for their identification. Centrophlebomyia orientalis Hendel, 1907 from northern India, is removed from synonymy with Centrophlebomyia anthropophaga and recognized as a valid species of Centrophlebomyia, stat. r. The nominal genus Protothyreophora Ozerov, 1984 is considered a junior synonym of Centrophlebomyia, syn. n.     

A remarkable new genus and a new species of chewing louse (Phthiraptera,Ischnocera, Philopteridae) from Brazil

A new genus of chewing louse as Bobdalgleishia, and its type species Bobdalgleishia stephanophallus sp. n. (Phthiraptera) belonging to the Brueelia-complex (Ischnocera: Philopteridae) are described. Adults of the new species are fully described, illustrated and compared morphologically with the type species of Motmotnirmus Mey & Barker, 2014, which is its closest relative. The type host of Bobdalgleishia stephanophallus is a subspecies of the great jacamar Jacamerops aureus ridgwayi Todd, 1943, an endemic Amazonian bird distributed in northern Brazil, and the type locality is the State of Pará. Bobdalgleishia is a remarkable genus with unique morphological and chaetotaxic characters which readily separate it from other members of the Brueelia-complex, in particular by having the first two marginal temporal and ocular setae very long.     

Systematics of the family Plectopylidae in Vietnam with additional information on Chinese taxa (Gastropoda,Pulmonata, Stylommatophora)

Vietnamese species from the family Plectopylidae are revised based on the type specimens of all known taxa, more than 600 historical non-type museum lots, and almost 200 newly-collected samples. Altogether more than 7000 specimens were investigated. The revision has revealed that species diversity of the Vietnamese Plectopylidae was previously overestimated. Overall, thirteen species names (anterides Gude, 1909, bavayi Gude, 1901, congesta Gude, 1898, fallax Gude, 1909, gouldingi Gude, 1909, hirsuta Möllendorff, 1901, jovia Mabille, 1887, moellendorffi Gude, 1901, persimilis Gude, 1901, pilsbryana Gude, 1901, soror Gude, 1908, tenuis Gude, 1901, verecunda Gude, 1909) were synonymised with other species. In addition to these, Gudeodiscus hemmeni sp. n. and Gudeodiscus messageri raheemi ssp. n. are described from north-western Vietnam. Sixteen species and two subspecies are recognized from Vietnam. The reproductive anatomy of eight taxa is described. Based on anatomical information, Halongella gen. n. is erected to include Plectopylis schlumbergeri and Plectopylis fruhstorferi. Additionally, the genus Gudeodiscus is subdivided into two subgenera (Gudeodiscus and Veludiscus subgen. n.) on the basis of the morphology of the reproductive anatomy and the radula. The Chinese Gudeodiscus phlyarius werneri Páll-Gergely, 2013 is moved to synonymy of Gudeodiscus phlyarius. A spermatophore was found in the organ situated next to the gametolytic sac in one specimen. This suggests that this organ in the Plectopylidae is a diverticulum. Statistically significant evidence is presented for the presence of calcareous hook-like granules inside the penis being associated with the absence of embryos in the uterus in four genera. This suggests that these probably play a role in mating periods before disappearing when embryos develop. Sicradiscus mansuyi is reported from China for the first time.     

Peruvian oribatid mites (Acari,Oribatida) from the German Biological Expedition,with description of a new species of the genus Pergalumna

The present study is based on oribatid mite material (Acari, Oribatida) collected during the German Expedition in 2011 in Peru. An annotated checklist of identified oribatid mites, including 16 species from 14 genera and 8 families, is provided. Thirteen species and two genera (Notohermannia, Zetomimus) are recorded for the first time in Peru; the genus Notohermannia and species Notohermannia obtusa are recorded for the first time in the Neotropical region. A new species of the genus Pergalumna (Galumnidae), Pergalumna paraboliviana sp. n., is described. The new species is most similar to Pergalumna boliviana Ermilov, 2013 from Bolivia, however, it differs from the latter by the body size, morphology of porose areas A1 and the presence of interlamellar setae.     

Ndrg4 is required for normal myocyte proliferation during early cardiac development in zebrafish

NDRG4 is a novel member of the NDRG family (N-myc downstream-regulated gene). The roles of NDRG4 in development have not previously been evaluated. We show that, during zebrafish embryonic development, ndrg4 is expressed exclusively in the embryonic heart, the central nervous system (CNS) and the sensory system. Ndrg4 knockdown in zebrafish embryos causes a marked reduction in proliferative myocytes and results in hypoplastic hearts. This growth defect is associated with cardiac phenotypes in morphogenesis and function, including abnormal heart looping, inefficient circulation and weak contractility. We reveal that ndrg4 is required for restricting the expression of versican and bmp4 to the developing atrioventricular canal. This constellation of ndrg4 cardiac defects phenocopies those seen in mutant hearts of heartstrings (hst), the tbx5 loss-of-function mutants in zebrafish. We further show that ndrg4 expression is significantly decreased in hearts with reduced tbx5 activities. Conversely, increased expression of tbx5 that is due to tbx20 knockdown leads to an increase in ndrg4 expression. Together, our studies reveal an essential role of ndrg4 in regulating proliferation and growth of cardiomyocytes, suggesting that ndrg4 may function downstream of tbx5 during heart development and growth.     

A new species of Labidocera (Copepoda,Calanoida, Pontellidae) collected from Okinawa,southwestern Japan,with establishment of five Indo-West Pacific species groups in the L. detruncata species complex

Labidocera churaumi sp. n. is described from Okinawa, southwestern Japan. The female of the new species differs from other congeners in genital compound somite with right postero-lateral and left antero-lateral processes. The male is distinguished from other congeners by the structure of the fifth leg. This new species is assigned to a newly proposed species group, the Labidocera madurae species group, within the Labidocera detruncata species complex. In this species complex five Indo-West Pacific species groups are recognized (cervi, detruncata, gangetica, madurae, and pavo) and defined on the basis of difference in sexual dimorphism.     

The Complete Plastid Genome Sequence of Madagascar Periwinkle Catharanthus roseus (L.) G. Don: Plastid Genome Evolution,Molecular Marker Identification,and Phylogenetic Implications in Asterids

The Madagascar periwinkle ( Catharanthus roseus in the family Apocynaceae) is an important medicinal plant and is the source of several widely marketed chemotherapeutic drugs. It is also commonly grown for its ornamental values and, due to ease of infection and distinctiveness of symptoms, is often used as the host for studies on phytoplasmas, an important group of uncultivated plant pathogens. To gain insights into the characteristics of apocynaceous plastid genomes (plastomes), we used a reference-assisted approach to assemble the complete plastome of C . roseus , which could be applied to other C . roseus -related studies. The C . roseus plastome is the second completely sequenced plastome in the asterid order Gentianales. We performed comparative analyses with two other representative sequences in the same order, including the complete plastome of Coffea arabica (from the basal Gentianales family Rubiaceae) and the nearly complete plastome of Asclepias syriaca (Apocynaceae). The results demonstrated considerable variations in gene content and plastome organization within Apocynaceae, including the presence/absence of three essential genes (i.e., accD, clpP, and ycf1) and large size changes in non-coding regions (e.g., rps2-rpoC2 and IRb-ndhF). To find plastome markers of potential utility for Catharanthus breeding and phylogenetic analyses, we identified 41 C . roseus -specific simple sequence repeats. Furthermore, five intergenic regions with high divergence between C . roseus and three other euasterids I taxa were identified as candidate markers. To resolve the euasterids I interordinal relationships, 82 plastome genes were used for phylogenetic inference. With the addition of representatives from Apocynaceae and sampling of most other asterid orders, a sister relationship between Gentianales and Solanales is supported.     

A new polystomatid (Monogenea,Polystomatidae) from the mouth of the North American freshwater turtle Pseudemys nelsoni

Based on material collected from Pseudemys nelsoni (Reptilia: Chelonia: Emydidae) during a parasite survey of the herpetofauna around Gainesville, Florida, USA, Polystomoides nelsoni sp. n. is described as a new polystome species. This parasite was found in the oral and pharyngeal region of the host. In a sample of nine Pseudemys nelsoni, three specimens were found to release polystome eggs. One turtle was euthanized and dissected and found to be infected in the oral region with 19 specimens belonging to an as-yet-unknown Polystomoides. This is only the fifth Polystomoides recorded from the Nearctic realm. This species is distinguished from known species by a combination of characteristics including marginal hooklet morphology, body length and haptor dimensions.     

Pycnogonids associated with the giant lion′s-paw scallop Nodipecten subnodosus (Sowerby) in Ojo de Liebre Bay,Guerrero Negro,Baja California Sur,Mexico

Five species of epibenthic pycnogonids collected on the giant lion´s-paw scallop Nodipecten subnodosus are recorded. A new species of Eurycyde, Eurycyde bamberi, is described. Of the 19 species known in this genus; the new species is closest to Eurycyde hispida Kroyer, 1844 but differs from it in the absence of plumose spines and the shapes of the lateral process, first coxa, and ocular tubercle. The new species represents the third member of Eurycyde from the eastern Pacific in addition to Eurycyde spinosa Hilton, 1916 and Eurycyde clitellaria Stock, 1955. Besides Eurycyde bamberi, the following species were collected: Nymphopsis duodorsospinosa Hilton, 1942c; Callipallene californiensis (Hall, 1913); Nymphon lituus Child, 1979; and Pycnogonum rickettsi Schmitt, 1934. Pycnogonum rickettsi is recorded for first time from Mexican waters, as is Nymphon lituus from the western coast of Baja California Peninsula. Each of these four species are re-described and re-illustrated in order to fill in existing gaps in the literature of the region.     

Efficient Mating-Type Switching in Candida glabrata Induces Cell Death

Candida glabrata is an apparently asexual haploid yeast that is phylogenetically closer to Saccharomyces cerevisiae than to Candida albicans. Its genome contains three MAT-like cassettes, MAT, which encodes either MATa or MATalpha information in different strains, and the additional loci, HML and HMR. The genome also contains an HO gene homolog, but this yeast has never been shown to switch mating-types spontaneously, as S. cerevisiae does. We have recently sequenced the genomes of the five species that, together with C. glabrata, make up the Nakaseomyces clade. All contain MAT-like cassettes and an HO gene homolog. In this work, we express the HO gene of all Nakaseomyces and of S. cerevisiae in C. glabrata. All can induce mating-type switching, but, despite the larger phylogenetic distance, the most efficient endonuclease is the one from S. cerevisiae. Efficient mating-type switching in C. glabrata is accompanied by a high cell mortality, and sometimes results in conversion of the additional cassette HML. Mortality probably results from the cutting of the HO recognition sites that are present, in HML and possibly HMR, contrary to what happens naturally in S. cerevisiae. This has implications in the life-cycle of C. glabrata, as we show that efficient MAT switching is lethal for most cells, induces chromosomal rearrangements in survivors, and that the endogenous HO is probably rarely active indeed.     

Ascaridoid nematodes of amphibians and reptiles: Ophidascaris Baylis, 1920

The genus Ophidascaris is revised and divided into five groups of species. A key for the species groups is provided. Group 1 (‘filaria’ group) occurs in pythons and a key is provided for differentiating eight species based on fresh and preserved specimens and on developmental patterns. O. papillifera (Linstow, 1898) is redescribed from the type-specimens and is considered to be close or identical to O. niuginiensis, for which Candoia carinatus is recorded as a new host. A key for the differentiation of species in Groups 2 to 5 is based on preserved specimens only. Group 2 (‘obconica’ group) contains (i) O. obconica and O. trichuriformis [= caballeroi] in South American colubrids (further investigation will probably show that O. trichuriformis is a synonym of O. obconica); new host records are Xenodon severus, X. neuwiedii, X. colubrinus, Leptodeira annulata, Thamnodynastes pallidus, Leimadophis poecilogyrus and Boa constrictor; (ii) O. ashi n. sp. (new species name for ‘O. labiatopapillosa’) in North American colubrids, new host records are Nerodia valida, Heterodon nasicus and Storeria occipitomaculata; (iii) O. mombasica in African colubrids; new host records are Psammophis phillipsii and P. sibilans; (iv) O. solenopoion in Madagascan colubrids; (v) O. pyrrhus in Australian elapids; new host records are Cacophis squamulosus, Cryptophis nigrescens, Demansia atra, D. olivacea, Hemiaspis signata, Hoplocephalus bitorquatus, H. stephensi, H. bungaroides and Tropedechis carinatus, it is also recorded in Australia in the colubrid Styporhyncus mairii (new host record) and in Demansia papuensis papuensis and D. olivacea papuensis in Papua New Guinea; (vi) O. piscatori in Asian colubrids; (vii) O. excavata [? = schikhobalovi] in Agkistrodon spp. and possibly other aquatic snakes in Asia; new host record is Agkistrodon halys blomhoffi. Group 3 (‘radiosa’ group) in African viperids contains O. radiosa [ = intorta] in Bitis spp. Specimens from Atheris nitschei, Causus rhombeatus and the colubrid Boaedon lineatus were similar, but showed differences indicating possibility of other species in this group. Group 4 (‘najae’ group) in African elapids and Asian elapids and colubrids contains O. najae [ = daubaylisi]; new host records are Ophiophagus hannah, Boiga cyanea, Elaphe carinata. Group 5 (‘arndti’ group) in South American crotalids and colubrids contains O. arndti [ = travassosi and sprenti] in Crotalus spp. and Bothrops spp.; new host record is B. atrox in Panama. No morphological differentiation except size could be detected between O. arndti in crotalines and O. sicki in colubrids, but in view of difference in the feeding habits of their host, both species names were tentatively sustained; new host records for O. sicki are Xenodon neuwiedii, Leimadophis poecilogyrus, Pseudoboa cloelia, Philodryas patagoniensis and Micrurus frontalis; O. ochoteranai was regarded as a species inquirenda. The following species previously placed in Amplicaecum are placed in Ophidascaris; excavata Hsu & Hoeppli, 1931; schikhobalovi Mozgovoy, 1950; robertsi Sprent & Mines, 1960; longispiculum Oshmarin & Demshin, 1972; orientalis Wang, 1965. The position of Ophidascaris in relation to other ascaridoids is discussed: it is placed within the subfamily Ascaridinae sensu Sprent (1983) containing all other ascaridoids of terrestrial animals. It is concluded that Ophidascaris is in a relatively recent stage of evolution. The most likely centre of dispersal for the genus appears to have been Central Africa with spread in one direction to Asia and thence to the New World and in another direction to Madagascar and Australia.     

A new Eastern Asian Hycleus and key to the Chinese species of the phaleratus group (Coleoptera,Meloidae, Mylabrini)

A new species of Hycleus belonging to the phaleratus group, and close to Hycleus phaleratus, is described. The new species, Hycleus marcipoli, is distributed in China (Gansu and Taiwan), Laos, and northern Thailand. A key to the Chinese species of this group is presented.