The potential effects of sex,posture and living condition on lateralized behaviors in ring-tailed lemurs (<Emphasis Type="Italic">Lemur catta</Emphasis>)

This research explores the effects of posture, sex, and living condition on hand and side preferences of semi-free-ranging, adult ring-tailed lemurs (Lemur catta) housed at the Duke University Primate Center in Durham, NC. Data were collected on 11 adult individuals (five females and six males) during normal daily activities over a ten-week period from May–July 2001. Variables analyzed in this study include unimanual behaviors (i.e., reach, hold, and limb used to start locomotion) and other potentially lateralized behaviors that do not involve handuse (i.e., whole-body turning and tail position). The data were analyzed to investigate potential individual and population level side biases for each behavior; potential sex biases in side preference for each behavior; and for ‘reach’, potential effects of posture (sitting, tripedal stance, or bipedal stance) on individual hand preferences. Additionally, to investigate potential effects of living condition on lateral biases, the data from this study were compared to data collected on the same individual Lemurs living under more restrictive living conditions during the previous year. Largely, as predicted based on available literature, we found that there was a significant sex difference across all hand-use categories and for whole-body turning, and that posture was a significant factor in the expression of hand preference for reaching. Contrary to previous research, the effect of living condition on lateral preferences was minimal, and no side preferences were found at the population level for any of the behaviors analyzed.     

Bioassay Approach to Prescribe Safe-limits of Exposure to Non Ionizing Radiation in Ecosystems

A biological assay that quantifies hazardous response in living matter to an electromagnetic stimulus, is evolved. Considering the various susceptible aspects of physio-anatomical systems constituting a living subject, a dominance criterion to determine an optimum all-or-none response limit of exposure to electromagnetic pollutions is established. Based on the statistics of proneness and susceptibility of discrete physio-anatomical parts of living systems (biotic components) to polluting radiations (abiotic environment), the stochastic nature of damage involved is considered to formulate a quantal index which specifies a “safe” intensity-level of electromagnetic radiation to which living systems can be exposed without encountering any deleterious effects. The locations of vulnerable parts which are affected by radiation are identified through random mosaic modeling of a test subject. Using this model, a susceptance priority sequence of biotic components is constructed. This sequence is then terminated at a point of weightage proportional to the diversity of victim population. The biotic species falling within this limit of truncation are subsequently studied to assay the tolerance (optimum lethal dose) of the test subject to the radiation in question. The possibility of simulating the entire ecological system under consideration by means of a microprocessor is suggested.     

The need to feed: homeostatic and hedonic control of eating

Feeding provides substrate for energy metabolism, which is vital to the survival of every living animal and therefore is subject to intense regulation by brain homeostatic and hedonic systems. Over the last decade, our understanding of the circuits and molecules involved in this process has changed dramatically, in large part due to the availability of animal models with genetic lesions. In this review, we examine the role played in homeostatic regulation of feeding by systemic mediators such as leptin and ghrelin, which act on brain systems utilizing neuropeptide Y, agouti-related peptide, melanocortins, orexins, and melanin concentrating hormone, among other mediators. We also examine the mechanisms for taste and reward systems that provide food with its intrinsically reinforcing properties and explore the links between the homeostatic and hedonic systems that ensure intake of adequate nutrition.     

Terminal Twist-Induced Writhe of DNA with Intrinsic Curvature

Supercoiling of a closed circular DNA rod may result from an application of terminal twist to the DNA rod by cutting the rod, rotating one of the cut faces as the other being fixed and then sealing the cut. According to White's formula, DNA supercoiling is probably accompanied by a writhe of the DNA axis. Deduced from the elastic rod model for DNA structure, an intrinsically straight closed circular DNA rod does not writhe as subject to a terminal twist, until the number of rotation exceeds a rod-dependent threshold. By contrast, a closed circular DNA rod with intrinsic curvature writhes instantly as subject to a terminal twist. This noteworthy character in fact belongs to many intrinsically curved DNA rods. By solving the dynamic equations, the linearization of the Euler–Lagrange equations governing intrinsically curved DNA rods, this paper shows that almost every clamped-end intrinsically curved DNA rod writhes instantly when subject to a terminal twist (clamped-end DNA rods include closed circular DNA rods and topological domains of open DNA rods). In terms of physical quantities, the exceptions are identified with points in ℝ⁶ whose projections onto ℝ⁵ (through ignoring the total energy density of a rod) form a subset of a quadratic hypersurface. This paper also suggests that the terminal twist induced writhe is due to the elasticity and the clamped-end boundary conditions of the DNA rods. To my sister for her 50th birthday.     

Necessity of chance: biological roulettes and biodiversity

Chance plays an important role in the dynamics of biodiversity. It is largely responsible for the spontaneous processes leading to biological diversification. The mechanisms behind chance belong to two categories: on the one hand, those outside of biological systems, and thus belonging to their environment, on the other hand, those endogenous to these systems. These last mechanisms are present at all levels of the hierarchical organization of the living world, from genes to ecosystems. We propose calling them 'biological roulettes'. Like roulettes in casinos, they could be deterministic processes functioning in chaotic domains and producing results that look as though they had been generated by random processes. The spontaneous appearance and natural selection of these roulettes have led to living systems potentially adapted to new environmental conditions not encountered before. They may even have permitted some of them to survive major upheavals. Moreover, palaeontological data show that the rate of biological diversification accelerates and that living systems become more and more complex over time. That may also increase their resilience. It can be also the consequence of the appearance and the selection of 'biological roulettes' and of chance they generate. They are at the same time products and engines of the evolution. Without them, life would have disappeared from the Earth a long time ago. Thus, they are of primary importance.     

上转换纳米颗粒介导的无线光遗传学技术的研究进展

光遗传学技术是结合基因工程和光学技术对生物体特定细胞进行精确调控的新兴生物技术,该技术可以特异性地兴奋或抑制靶神经元,成为解析介导特定行为神经环路的强有力的工具.传统技术依赖光纤,对脑组织有损伤且限制了动物的自由活动.新一代上转换纳米颗粒介导的无线光遗传学技术,借助近红外光组织穿透相对深的特性,能够对啮齿类动物脑组织深层核团进行无线调控,克服了传统技术中埋置光纤存在的缺陷.本文总结了上转换纳米颗粒介导的无线光遗传学技术的发展历程及现状,比较分析了这类无线光遗传学技术的优缺点,最后对该技术面临的挑战及未来前景进行了分析和展望.     

Utilizing the green alga Chlamydomonas reinhardtii for microbial electricity generation: a living solar cell

By employing living cells of the green alga Chlamydomonas reinhardtii, we demonstrate the possibility of direct electricity generation from microbial photosynthetic activity. The presented concept is based on an in situ oxidative depletion of hydrogen, photosynthetically produced by C. reinhardtii under sulfur-deprived conditions, by polymer-coated electrocatalytic electrodes.     

Orientation of the sandhopperTalitrus saltator (Amphipoda,Talitridae) living on dynamic sandy shores

Summary The littoral sandhopperTalitrus saltator Montagu maintains its position along the beach mainly by means of an innate solar orientation. Different populations show different directional tendencies depending on the direction of the sealand axis. Experiments were designed which aimed to disentangle the innate and acquired components of the escape orientation. Therefore, the solar orientation of experienced adults living on shores subject to fluctuations of the shoreline and of their laboratory-born (inexperienced) offspring were compared. The innate sun compass orientation shown by the young is modified by learning during life under natural conditions, depending on the variability of the shore. Results showed: (1) an improvement in the solar orientation in individuals living on relatively constant shores; (2) a loss of precision in individuals living on highly dynamic shores; (3) a change to a new ecologically efficient escape direction in individuals living on a relatively stable lagoon shore.Abbreviation TED theoretical escape direction     

Protein disorder,prion propensities,and self-organizing macromolecular collectives

Eukaryotic cells are partitioned into functionally distinct self-organizing compartments. But while the biogenesis of membrane-surrounded compartments is beginning to be understood, the organizing principles behind large membrane-less structures, such as RNA-containing granules, remain a mystery. Here, we argue that protein disorder is an essential ingredient for the formation of such macromolecular collectives. Intrinsically disordered regions (IDRs) do not fold into a well-defined structure but rather sample a range of conformational states, depending on the local conditions. In addition to being structurally versatile, IDRs promote multivalent and transient interactions. This unique combination of features turns intrinsically disordered proteins into ideal agents to orchestrate the formation of large macromolecular assemblies. The presence of conformationally flexible regions, however, comes at a cost, for many intrinsically disordered proteins are aggregation-prone and cause protein misfolding diseases. This association with disease is particularly strong for IDRs with prion-like amino acid composition. Here, we examine how disease-causing and normal conformations are linked, and discuss the possibility that the dynamic order of the cytoplasm emerges, at least in part, from the collective properties of intrinsically disordered prion-like domains. This article is part of a Special Issue entitled: The emerging dynamic view of proteins: Protein plasticity in allostery, evolution and self-assembly.     

A Geodata Production System: To allow people to stay at home or follow medical equipments in the hospitals

ObjectivesThe well-being of people depends in part on the sense of freedom, and one aspect is certainly the possibility for people to remain at home. However, there is a need for “following” the movements and, if possible, the activity of the person. The problem is that very few home systems make it possible to have these data at a reasonable price, and at an acceptable reliability level. We offer a simple to use, reliable and energy self-sufficient person location system. People are the first “targets”, but objects could be involved.Material and methodsThe system is described and their performance analyzed in real conditions of use. The positioning algorithms are explained and the practical implementations described.ResultsFirst results on the activity of a person at home are presented as well as some tracks on the type of data processing that could be considered.The simplicity of deployment is shown and the usefulness of the available data is discussed in the context of home care of an elderly person as well as the monitoring of hospital equipment.ConclusionOur approach provides simplicity of implementation and very high reliability in real time, without aiming for high accuracy in all cases. Conceptually taking into account the high variability of indoor radio measurements makes it possible to significantly increase the reliability of the geo-data produced. Moreover, we will mention two real deployments and the associated performances obtained, carried out in order to follow the behavior of an old autonomous man living alone at home, and in another hand to follow the stretchers of the emergency department of a French hospital.     

The key role of solvent in condensation: Mapping water in liquid-liquid phase-separated FUS

Formation of biomolecular condensates through liquid-liquid phase separation (LLPS) has emerged as a pervasive principle in cell biology, allowing compartmentalization and spatiotemporal regulation of dynamic cellular processes. Proteins that form condensates under physiological conditions often contain intrinsically disordered regions with low-complexity domains. Among them, the RNA-binding proteins FUS and TDP-43 have been a focus of intense investigation because aberrant condensation and aggregation of these proteins is linked to neurodegenerative diseases such as amyotrophic lateral sclerosis and frontotemporal dementia. LLPS occurs when protein-rich condensates form surrounded by a dilute aqueous solution. LLPS is per se entropically unfavorable. Energetically favorable multivalent protein-protein interactions are one important aspect to offset entropic costs. Another proposed aspect is the release of entropically unfavorable preordered hydration water into the bulk. We used attenuated total reflection spectroscopy in the terahertz frequency range to characterize the changes in the hydrogen bonding network accompanying the FUS enrichment in liquid-liquid phase-separated droplets to provide experimental evidence for the key role of the solvent as a thermodynamic driving force. The FUS concentration inside LLPS droplets was determined to be increased to 2.0 mM independent of the initial protein concentration (5 or 10 μM solutions) by fluorescence measurements. With terahertz spectroscopy, we revealed a dewetting of hydrophobic side chains in phase-separated FUS. Thus, the release of entropically unfavorable water populations into the bulk goes hand in hand with enthalpically favorable protein-protein interaction. Both changes are energetically favorable, and our study shows that both contribute to the thermodynamic driving force in phase separation.     

The mysterious presence of a 5-methylcytosine oxidase in the Drosophila genome

5-methylcytosine is an important epigenetic modification involved in gene control in vertebrates and many other complex living organisms. Its presence in Drosophila has been a matter of debate and recent bisulfite sequencing studies of early-stage fly embryos have concluded that the genome of Drosophila is essentially unmethylated. However, as we outline here, the Drosophila genome harbors a well-conserved homolog of the TET protein family. The mammalian orthologs TET1/2/3 are known to convert 5-methylcytosine into 5-hydroxymethylcytosine. We discuss several possible explanations for these seemingly contradictory findings. One possibility is that the 2 modified cytosine bases are generated in Drosophila only at certain developmental stages and in a cell type-specific manner during neurogenesis. Alternatively, Drosophila Tet and its mammalian homologs may carry out catalytic activity-independent functions, and the possibility that these proteins may oxidize 5-methylcytosine in RNA created by the methyltransferase Dnmt2 should also be strongly considered.     

Maintaining microendemic primate species along an environmental gradient – parasites as drivers for species differentiation

Understanding the drivers of species adaptations to changing environments on the one hand and the limits for hybridization on the other hand is among the hottest questions in evolutionary biology. Parasites represent one of the major selective forces driving host evolution and at least those with free‐living stages are at the same time dependent on the ecological conditions of their host's habitat. Local immunological adaptations of host species to varying parasite pressure are therefore expected and might represent the genetic basis for ecological speciation and the maintenance of recently diverged species. Madagascar provides one of the rare examples where two partially sympatric primate species (Microcebus griseorufus, M. murinus) and their hybrids, as well as an allopatric species (M. cf rufus) live in close proximity along a very steep environmental gradient ranging from southern dry spiny bush to gallery forest to evergreen eastern humid rain forest, thus mimicking the situation encountered during extensions and retreats of vegetation formations under changing climatic conditions. This system was used to study parasite infection and immune gene (MHC) adaptations to varying parasite pressure that might provide selective advantages to pure species over hybrids. Parasite burdens increased with increasing humidity. M. griseorufus, M. murinus, and their hybrids but not M. rufus shared the same MHC alleles, indicating either retention of ancestral polymorphism or recent gene flow. The hybrids had much higher prevalence of intestinal parasites than either of the parent species living under identical environmental conditions. The different representation of parasites can indicate a handicap for hybrids that maintains species identities.     

Effects of modulation of the redox system on endogenous lipoperoxidation in the rat central nervous system

In this study we have measured malonaldehyde (MDA) as an index of endogenous lipoperoxidation, the latter being a relevant aspect of oxidative stress that occurs in different neuronal systems. Our results clearly demonstrate that in physiological conditions specific neuronal systems exhibit a different rate of MDA formation among which substantia nigra neurons show a particular vulnerability to oxidative stress. Chronic ethanol treatment significantly enhances MDA production, particularly at the level of cholinergic structures (septum) as well as in the dopaminergic system (substantia nigra) and cortex. On the other hand, treatment with glutathione is able to decrease MDA formation, pointing out the possibility of an exogenous modulation of redox balance in brain cells.     

Adaptive properties of living beings: proposal for a generic mechanism. (Self-programming machines III)

Living systems are capable to have appropriate responses to unpredictable environment. This kind of self-organization seems to operate as a self-programming machine, i.e. an organization able to modify itself. Until now the models of self-organization of living beings proposed are functions solutions of differential systems or transition functions of automata. These functions are fixed and these models are therefore unable to modify their organization. On the other hand, computer science propose a lot of models having the properties of adaptive systems of living beings, but all these models depend on the comparison between a goal and the results and ingenious choices of parameters by programmers, whereas there are no programmer's intention nor choice in the living systems. From two best known examples of adaptive systems of living beings, nervous system and immune system that have in common that the external signals modify the rewriting of their organization and therefore work as self-organizing machines, we devised machines with a finite set of inputs, based upon a recurrence, are able to rewrite their organization (Self-programming machines or m(sp)) whenever external conditions vary and have striking properties of adaptation. M(sp) have similar properties whatever the operation defining the recurrence maybe. These results bring us to make the following statement: adaptive properties of living systems can be explained by their ability to rewrite their organization whenever external conditions vary under the only assumption that the rewriting mechanism be a deterministic constant recurrence in a finite state set.     

Centrin association with the flagellar apparatus in spores ofPhytophthora cinnamomi

Summary Antibodies raised against the calcium-binding protein centrin, were used to identify and localise centrin containing structures in the flagellar apparatus of zoospores and cysts of the oomycetePhytophthora cinnamomi. Immunoblotting of extracts from zoospores indicates that theP. cinnamomi centrin homologue is a 20 kDa protein. Immunofluorescence microscopy with anti-centrin antibodies reveals labelling in the flagella, the basal body connector and co-localisation along the microtubular R1 root (formerly called AR3) that runs from the right side of the basal body of the anterior flagellum into the anterior of the zoospore close to the ventral surface. The centrin (R1^cen) and tubulin components of the R1 root split into four loops on the right hand side of the ventral groove and rejoin along the left hand side of the groove. The R1 root continues down the left hand side of the zoospore past the basal bodies and parallel to the R4 root. We propose that at least inP. cinnamomi there is no R2 root. Immunogold labelling confirms that centrin is a component of the basal body connector complex. When the zoospores become spherical during encystment, the R1^cen pivots by approximately 90 ° with respect to the nucleus.     

Unifying sources and sinks in ecology and Earth sciences

The paired source and sink concepts are used increasingly in ecology and Earth sciences, but they have evolved in divergent directions, hampering communication across disciplines. We propose a conceptual framework that unifies existing definitions, and review their most significant consequences for the various disciplines. A general definition of the source and sink concepts that transcends disciplines is based on net flows between the components of a system: a source is a subsystem that is a net exporter of some living or non‐living entities of interest, and a sink is a net importer of these entities. Sources and sinks can further be classified as conditional and unconditional, depending on the intrinsic propensity of subsystems to either produce (source) or absorb (sink) a surplus of these entities under some (conditional) or all (unconditional) conditions. The distinction between conditional and unconditional sources and sinks, however, is strongly context dependent. Sources can turn into sinks, and vice versa, when the context is changed, when systems are subject to temporal fluctuations or evolution, or when they are considered at different spatial and temporal scales. The conservation of ecosystem services requires careful consideration of the source?sink dynamics of multiple ecosystem components. Our synthesis shows that source?sink dynamics has profound consequences for our ability to understand, predict, and manage species and ecosystems in heterogeneous landscapes.