Pseudo-nitzschia species population dynamics in the Quoddy Region, Bay of Fundy

The population dynamics of Pseudo-nitzschia species from the Quoddy Region of the Bay of Fundy was examined in a field-based study. Five stations were sampled over a period of 11 weeks during the course of one discrete bloom episode in 2003 with seven species of Pseudo-nitzschia found and enumerated: P. americana, P. delicatissima, P. pseudodelicatissima, P. fraudulenta, P. pungens, P. seriata and P. subpacifica. We related species abundance to physical and chemical properties of seawater (transparency, fluorescence, silicate, phosphate, nitrite + nitrate, ammonia, nitrite, oxygen, sigma-t, tidal level, tidal state and total depth of water column) using canonical correspondence analysis (CCA) to identify factors explaining the greatest amount of variance in their temporal and spatial distribution patterns. Our results indicate that abundance of species and groups of species correlated well with certain specific chemical and physical properties of seawater. P. pseudodelicatissima and P. delicatissima abundance was positively correlated with nitrates and P. americana with depth of the water column. P. pungens was more abundant in samples with higher concentrations of phosphates and lower concentrations of nitrates. P. seriata abundance was negatively associated with total fluorescence. P. subpacifica and P. fraudulenta abundances were not statistically related to any of the variables examined. Our data therefore provides direction for testable, hypothesis driven experiments that could provide predictive insights into the occurrence of certain harmful algal bloom (HAB) species should specific environmental variables be further affected along the gradients extracted in this study.     

Detection of Pseudo-nitzschia (Bacillariophyceae) species and amnesic shellfish toxins in Scottish coastal waters using oligonucleotide probes and the Jellet Rapid Test™

Species specific LSU rRNA targeted fluorescent oligonucleotide probes, designed by researchers at the Monterey Bay Aquarium Research Institute (USA) for a limited range of Pseudo-nitzschia species, were applied to unialgal cultures and Scottish field samples, to investigate possible applications in Scottish phytoplankton monitoring programmes to detect potential amnesic shellfish poisoning (ASP) toxin producing species. The existing available probe for Pseudo-nitzschia australis gave good results, positively labelling cells from cultures and field samples. However, application of the P. pungens, P. delicatissima and P. fraudulenta probes gave poor results, with little or no fluorescence label observed in field samples, while transmission electron microscopy (TEM) showed these species to be present. Comparison of the same region of the LSU sequence from cultures of P. delicatissima, isolated from Scottish waters, with the probe designed for detection of P. delicatissima isolated from Monterey Bay revealed the presence of a single base difference between the two sequences, which may have prevented the probe from hybridising to Scottish isolates and cells from field samples. In an attempt to assess the potential ASP toxin production by field populations of Pseudo-nitzschia a rapid immunodiagnostic test (the Jellet Rapid Test, JRT) for ASP toxins was examined. Results indicate that additional development of molecular probes for the detection of a range of Pseudo-nitzschia species detected in Scottish coastal waters and the use of JRT for toxin detection could conceivably provide an effective tool for broad-scale mapping of toxin events and management of coastal zone activities.     

台湾地区芽胞杆菌物种多样性

了解芽胞杆菌资源多样性, 可为芽胞杆菌功能资源挖掘和菌剂开发提供基础。从台湾地区8个市(县)采集土壤样本, 从20份土壤样品中分离获得了136株芽胞杆菌, 采用16S rRNA基因同源性将其鉴定为芽胞杆菌科的2个属、20个种。分别属于芽胞杆菌属(Bacillus)的16个种和赖氨酸芽胞杆菌属(Lysinibacillus)的4个种。根据分离频度分析得知, 台湾地区土壤中的芽胞杆菌优势菌群为阿氏芽胞杆菌(Bacillus aryabhattai)、苏云金芽胞杆菌(B. thuringiensis)和蜡样芽胞杆菌(B. cereus), 其他种类分布极其不均匀。芽胞杆菌Shannon多样性指数为1.2925-2.5850, 最高的为台中市和嘉义市(2.5850), 最低的为桃园县(1.2925)。根据分离频度对芽胞杆菌种类的聚类分析显示, 当欧式距离λ = 20时, 芽胞杆菌种类可分为高频度分布类型如阿氏芽胞杆菌(B. aryabhattai), 低频度分布类型如简单芽胞杆菌(B. simplex)。依据分离频度对8个采样点间的聚类分析未发现采样点间的芽胞杆菌种类分布的相关性。本研究认为台湾地区土壤中蕴藏着丰富芽胞杆菌种类多样性高, 具有很大的开发潜力。     

武夷山自然保护区土壤可培养芽胞杆菌 的物种多样性及分布

为了解武夷山自然保护区土壤中可培养芽胞杆菌的分布状况, 2012年6月从该保护区的黄岗山顶部、中部、底部和桐木关、挂墩、大竹岚等6个地点采集土样75份。用80℃水浴加热、稀释平板法进行芽胞杆菌的分离, 并根据16S rRNA基因序列分析对菌株进行初步鉴定。从土样中分离出芽胞杆菌418株, 鉴定为8个属42个种, 其中Bacillus属的种数最多, 有20种, Paenibacillus属和Lysinibacillus属分别有8种和7种。不同地点分离到的芽胞杆菌在种类、数量上存在差异: 从大竹岚土壤中分离到的芽胞杆菌种类最多, 从黄岗山中部和底部分离到的种类数则较少; 挂墩、大竹岚土壤中芽胞杆菌的数量较大, 达3.6×10⁶ cfu/g以上, 而黄岗山顶部和中部土壤中的数量则少于4.9×10⁵ cfu/g。Bacillus cereus、B. mycoides、B. thuringiensis和Lysinibacillus xylanilyticus等4个种在6个地点的土样中均有分离到, 其中B. thuringiensis、L. xylanilyticus是该保护区土壤中的优势种。桐木关土壤中芽胞杆菌的种类多样性和均匀度指数都比其他5个地点的高, 而挂墩土壤中芽胞杆菌的Shannon-Wiener多样性、均匀度和优势度指数都最低。B. mycoides和B. thuringiensis的数量与海拔显著相关, 相关系数分别为0.852和-0.834, B. cereus、B. mycoides、B. thuringiensis的分离频度与海拔的相关性极显著, 相关系数分别为0.960、0.952和-0.931。研究结果表明, 武夷山自然保护区土壤中可培养芽胞杆菌的种类丰富、数量较大, 具有较高的多样性。     

基于DNA条形码技术对浙江省外来入侵福寿螺进行分子鉴定

外来入侵福寿螺对我国农业生产和水生生态系统平衡等造成严重危害。2010年, 种类鉴定研究首次揭示我国外来入侵福寿螺包括Pomacea canaliculata和P. maculata两个种, 而浙江省仅见P. canaliculata一种报道。P. canaliculata和P. maculata种间形态近似, 且受环境、食物源等因素影响, 同种内外壳形态特征多样, 因而基于形态特征进行种类的准确鉴定极为困难。本研究在采集浙江省7个区县的福寿螺样本的基础上, 利用DNA条形码技术扩增了101个不同个体的COI序列, 并从BOLD数据库下载了“P. canaliculata种团”的5个近缘种的55条COI序列用于分析, 其中包括P. lineata, P. dolioides和P. paludosa所有已发表序列, 以及P. canaliculata和P. maculata的南美洲样品的序列等。序列相似度比对、DNA条形码间隙和系统发育树等分析表明, COI序列可以实现近缘福寿螺的有效鉴别。待测的浙江省福寿螺样品中, 杭州江干区检测到P. canaliculata和P. maculata两种, 而舟山普陀区、绍兴上虞区和新昌县、温州瓯海区及杭州西湖区仅检测到P. canaliculata, 表明P. canaliculata在浙江省具有更广的分布范围。P. canaliculata和P. maculata分别形成4种和2种单倍型, 各区县样点分别包含1-3种单倍型, 浙江省各发生地呈现较低的遗传多样性。依据系统发育关系推测, 浙江省分布的P. canaliculata和P. maculata分别可能来源于阿根廷和巴西。     

Domoic acid production by Pseudo-nitzschia calliantha Lundholm, Moestrup et Hasle (bacillariophyta) isolated from the Black Sea

A species of Pseudo-nitzschia isolated from Sevastopol Bay, Black Sea, was examined for its toxicity. The species was identified as P. calliantha Lundholm, Moestrup et Hasle based on SEM and TEM examination. Domoic acid (DA) was detected in batch culture throughout the growth cycle of P. calliantha. The production of DA by this diatom species was confirmed by fluorenylmethoxycarbonyl (FMOC) derivatization and HPLC-fluorescence method. The cellular DA level was higher in the early exponential phase, with the maximum value of 0.95 pg DA cell⁻¹. In the stationary phase, the cellular DA levels declined. This is the first record of a DA producing diatom isolated from the Black Sea.     

Quantification of the slug parasitic nematode Phasmarhabditis hermaphrodita from soil samples using real time qPCR

Phasmarhabditis hermaphrodita is a nematode parasite that infects and kills several species of slugs. The nematode is produced commercially as a biological control agent for slug pests of agriculture and horticulture. Given the difficulties of distinguishing this species from other nematode species in soil samples, very little is known about its natural ecology or its behaviour and persistence following application for biological control. Here we describe a method to quantify P. hermaphrodita in soil samples based on real time PCR. We designed primers and a dual labelled fluorescent probe that can be used to quantify numbers of P. hermaphrodita and which is capable of distinguishing this species from the morphologically identical Phasmarhabditis neopapillosa. We compared different methods whereby the entire nematode community is extracted prior to DNA extraction, and three methods to extract DNA directly from soil samples. Both nematode extraction and DNA extraction from large (10 g) samples of soil gave reliable estimates of nematode numbers, but methods which extracted DNA from small (1 g or less) soil samples substantially underestimated numbers. However, direct extraction of DNA from soils may overestimate numbers of live nematodes as DNA from dead nematodes was found to persist in soil for at least 6 days. The technique could be modified for detection and quantification of all soil borne parasitic nematodes.     

基于叶绿体DNA atpB-rbcL片段的典型樱亚属部分种的亲缘关系及分类地位探讨

蔷薇科典型樱亚属植物（Subg.Cerasus Koehne）（樱花类）具有重要的观赏价值,深入研究其种间亲缘关系及分类地位,对于国产樱属植物系统发育与种质资源创新具有重要的理论指导意义。基于PCR扩增与测序技术研究了从云南、江西、福建采集的典型樱亚属3个种（含变种）的叶绿体DNA非编码区atpB-rbcL片段,结合GenBank数据库已经提交的其它4个种的同源序列,共获得7个种的30条序列矩阵,以此构建了单倍型中介网络图与系统发育树,分析和探讨了它们的亲缘关系与分类地位。（1）在atpB-rbcL序列矩阵中,774个有效位点中共发现15个多态性位点,占分析序列的1.94%,（A+T）含量为70.50%,存在明显的碱基偏好;（2）DNASP 5共检测到9个单倍型,物种间平均单倍型多样性（H_d=0.880 5±0.026）,平均核苷酸多态性（π=0.007 11±0.000 54）,除尾叶樱桃（Prunus dielsiana）外（Hap5~Hap7）,其余物种拥有各自独特的1个单倍型,具有较丰富的遗传多样性;（3）综合Network中介图与系统发育重建结果：推测磐安樱桃（P.pananensis）处于较原始的进化阶段,相比尾叶樱桃,与浙闽樱桃（P.schneideriana）亲缘关系较近;长柱尾叶樱桃（P.dielsiana var.longistyla）与尾叶樱桃互为姊妹支,并共同构成独立进化单元。综上,叶绿体atpB-rbcL片段在典型樱亚属下种间的适用效果较好,可以优先选为DNA条形码;分子证据结合形态学特征支持将长柱尾叶樱桃作为尾叶樱桃变种的处理意见,而磐安樱桃的分类地位则需要更多的证据。     

滇杨种群遗传多样性与遗传结构

滇杨(Populus yunnanensis)是我国西南地区的特有树种, 具有速生、易无性繁殖、适应性强等优良特性, 是典型的南方型杨属树种。研究滇杨遗传多样性及种群结构对其种质资源的收集、保存和利用具有重要的意义。本研究从我国滇杨主要分布区云南和四川共采集了6个种群, 包括云南的昭通(ZT)、会泽(HZ)、嵩明(SM)、洱源(EY)、拉市海(LS)以及四川的美姑(MG), 共64个个体, 利用34对SSR分子标记和3对cpDNA叶绿体标记开展遗传多样性与遗传结构研究。SSR引物共检测到154个等位基因, 平均等位基因数为4.529, 观测杂合度(Ho)与期望杂合度(He)分别为0.552和0.472, 遗传分化系数(Fst)平均值为0.238, 多态性信息含量指数(PIC)平均值为0.421, 基因流(Nm)为0.806。滇杨的遗传结构分析(DAPC)与遗传距离的主坐标分析(PCoA)、UPGMA聚类分析均将6个种群划分为3个亚类: 第І亚类包括昭通种群、会泽种群和嵩明种群的4个个体, 第ІІ亚类包括嵩明种群的6个个体以及洱源种群和拉市海种群, 第III亚类为美姑种群; 嵩明种群包含第І和第ІІ两个亚类的混合遗传成分。3个cpDNA联合序列中共检测到35个变异位点, 分为13个单倍型, 其中单倍型H5在种群中分布最为广泛, 其余的单倍型均为种群特有的单倍型。分子方差分析(AMOVA)表明种群内的遗传变异大于种群间变异。研究表明滇杨不同种群的遗传分化具有地域性, 可选择就地保护; 昭通种群遗传多样性最高, 且包含7种叶绿体单倍型, 单倍型类型最多, 应优先保护。     

不同天然居群小蓬竹的遗传多样性

从分子水平探讨不同居群小蓬竹的遗传多样性以及与环境因子的相关性,揭示其濒危原因,为小蓬竹的保护和后续开发利用提供理论支撑,助力实施极危物种最佳保护策略。运用RAPD标记技术和POPGENE32对16个小蓬竹天然居群进行遗传多样性研究和遗传变异分析。结果表明,8个RAPD随机引物共扩增出105条清晰、重复性高的条带,其中多态性条带有98条,分子量300~2000bp;物种水平多态性位点百分率PPL=93.33%,有效等位基因数Ne=1.4942,Nei’s基因多样性H=0.3005,Shannon多样性指数I=0.4586;落湾(ZY1)居群的遗传多样性水平最高(PPL=60.95%,H=0.2329,I=0.3451),[JP3]桃坡(PT1)居群的最低(PPL=44.76%,H=0.1700,[JP]I=0.2523);16个天然居群的遗传分化系数Gst=0.3231,基因流Nm=1.0478,基于Shannon’s多样性指数的分化系数[(HSP-HPOP)/HSP]为0.3429。小蓬竹居群内存在丰富的遗传多样性,各个天然居群间具有一定的遗传分化但分化水平并不高,主要的遗传变异存在于居群内部。     

Burkholderia genome analysis reveals new enzymes belonging to the nitrilase superfamily. The amidase of Burkholderia cepacia (hospital isolate)

Burkholderia cepacia (formerly Pseudomonas cepacia) grows in media containing acetamide or propionamide as C and N sources. Chromosomal DNA from a hospital isolate of B. cepacia served as a template in PCRs using primers designed for the amplification of the P. aeruginosa amiE gene that encodes an aliphatic amidase. Partial sequencing of the PCR products gave a translated sequence 100% identical with the amino acid sequence of P. aeruginosa amidase. A search of Burkholderia genomes detected a putative amidase in B. cepacia J2315 with high identity to the P. aeruginosa amidase and predicted that other Burkholderia species also possessed CN_hydrolases that use the same catalytic triad (Glu–Lys–Cys) as amidase. Superimposition of theoretical three-dimensional models suggested that differences in the amino acid sequences between amidases from B. cepacia (hospital isolate) and B. cepacia J2315 do not affect their three-dimensional structure.     

Molecular characterization and mitochondrial sequence variation in two sympatric species of Proechimys (Rodentia: Echimyidae) in French Guiana

Variations in mitochondrial DNA characters were used to characterize two morphologically similar and sympatric species of Neotropical terrestrial rodents of the genus Proechimys (Mammalia: Echimyidae). We sequenced both cytochrome b (1140 pb) and part of the control region (445 pb) from four individuals of P. cuvieri and five of P. cayennensis from French Guiana, which allowed us to depict intra- and inter-specific patterns of variation. The phylogenetic relationships between the nine sequences evidence the monophyly of each species, and illustrate that more polymorphism might exist within P. cuvieri than within P. cayennensis. By developing species-specific primers to amplify a fragment of the cytochrome b gene, we were able to identify 50 individuals of Proechimys spp. caught in two localities of French Guiana. In both sites of primary rainforests, we showed that the two species live in syntopy, and this observation emphasizes the need to document ecological differences which should exist in order to diminish inter-specific competition.     

密云水库上游油松人工水源涵养林林下植物多样性与土壤理化特性

以密云水库上游丰宁县4种油松人工水源涵养林(油松×落叶松混交林、油松×蒙古栎混交林、油松×山杏混交林、油松纯林)为对象,研究林下植物多样性与土壤理化性质特征,分析林下植物多样性与土壤因子的相关关系。结果表明: 4种人工水源涵养林林下植物群落组成结构差异显著,油松×山杏混交林林下植物群落物种组成最为丰富,绣线菊、虎榛子和披针薹草为主要优势种。从物种丰富度指数、Simpson优势度指数、Shannon多样性指数、Pielou均匀度指数来看,油松×山杏混交林林下整体植物多样性水平最高,灌木层和草本层植物多样性分别以油松×蒙古栎混交林和油松×山杏混交林最高。4种人工水源涵养林之间除全磷外其他各理化指标均差异显著,油松×山杏混交林土壤理化性质总体最优,油松×蒙古栎混交林最差。土壤毛管孔隙度、pH、有机质为灌木层植物多样性的主要影响因子,土壤pH、毛管持水量为草本层植物多样性的主要影响因子。营造油松×山杏混交林更有利于提高林下植物多样性并促进土壤改良,土壤pH、有机质、毛管孔隙度、毛管持水量为影响研究区林下植物多样性的主导土壤因子。     

Revision of the genus Cryptomonas (Cryptophyceae): a combination of molecular phylogeny and morphology provides insights into a long-hidden dimorphism

Seventy-three strains of cryptophytes assigned to the genera Cryptomonas, Campylomonas or Chilomonas were studied by light microscopy, spectrophotometry and whole-mount electron microscopy. Twelve groups of strains were distinguished by light and whole mount electron microscopy using a combination of characters, mainly cell size, type of periplast and presence/absence and number of pyrenoids. However, characters previously used to distinguish Cryptomonas from Campylomonas (e.g. the type of periplast: polygonal periplast plates vs. a continuous periplast sheet) were found to occur together in dimorphic strains, indicating that periplast types relate to different life-history stages of a single taxon. To evaluate the taxonomic significance of the type of periplast and other characters previously used to distinguish genera and species, representatives of each strain group were subjected to molecular phylogenetic analyses using two nuclear ribosomal DNA regions (ITS2, partial LSU rDNA) and a nucleomorph ribosomal gene (SSU rDNA). The results of the phylogenetic study provide molecular evidence for a life history-dependent dimorphism in the genus Cryptomonas: the genus Campylomonas represents the alternate morph of Cryptomonas. Campylomonas and Chilomonas are reduced to synonyms of Cryptomonas, the genus Cryptomonas is revised and typified, two new species are described and six species are emended.     

Polyphyly and species delimitation of Picea brachytyla (Pinaceae) based on population genetic data

Accurate species delimitation is fundamental to biodiversity conservation. The endangered spruce Picea brachytyla (Franch.) E. Pritz. was suggested to be polyphyletic based on a limited number of samples in previous studies. To evaluate polyphyly of P. brachytyla, we sampled 139 individuals from 16 populations across most of its distributional range, plus representatives of two related species, Picea likiangensis (Franch.) E. Pritz. and Picea wilsonii Mast. We sequenced 13 nuclear loci and three chloroplast and two mitochondrial loci for the following species delimitation. Phylogenetic analyses of nuclear loci grouped all individuals of P. brachytyla from Sichuan and Chongqing into one distinct lineage and those from Yunnan and Tibet (southern distribution) nested within the P. likiangensis species complex. Structure analyses confirmed this result. Networks of chloroplast DNA haplotypes similarly showed that P. brachytyla from the southern distribution nested within the P. likiangensis species complex, whereas haplotypes for the northern distribution comprised a separate and well-supported lineage. These results suggest that P. brachytyla from the southern distribution is a part of the P. likiangensis species complex and should be removed from P. brachytyla. Our study highlights the utility of population genetic evidence in delimitating endangered species and understanding the conservation status of such species.     

中国东部海岛黑松群落功能多样性的纬度变异及其影响因素

黑松(Pinus thunbergii)群落在中国东海和黄海海域的海岛广泛分布, 研究其功能多样性的纬度变化特征及其影响因素, 有助于揭示是否在高度隔离的片断化景观中, 同一植物群落类型的生物多样性也具有显著的纬度地带性特征。该研究调查和测定了中国东部海域跨越13个纬度的27个海岛60个黑松群落的物种组成和植物功能性状, 分析了生物因素(黑松优势度和物种多样性)与非生物因素(年平均气温、总太阳辐射和干旱指数)与黑松群落功能多样性的关系, 并利用广义线性回归和方差分解揭示了各影响因素对黑松群落功能多样性的相对影响。主要结果: 随纬度升高, 群落的黑松优势度和物种丰富度, 以及枝干性状和枝叶性状总体的功能丰富度、功能分散度、Rao二次熵均显著降低, 但叶片功能多样性无显著变化趋势。黑松优势度、物种多样性和气候综合解释了枝叶性状总体功能丰富度、分散度和Rao二次熵变异的63%、47%和39%, 枝干性状功能丰富度、分散度和Rao二次熵变异的56%、67%和53%, 对叶片性状功能多样性的综合解释度较低(21%-30%)。物种丰富度和辛普森多样性显著增加叶功能多样性, 香农-维纳多样性显著降低叶功能丰富度。干旱度显著增加枝叶性状总体和枝干功能多样性, 年平均气温显著降低枝干功能分散度和Rao二次熵。该结果表明, 中国东部海岛黑松群落的功能多样性具有明显的纬度格局, 气候因素和物种丰富度是决定黑松群落功能多样性纬度变异的重要因素。     

Cartographie de restriction comparée de la séquence d''ADN hautement répétée coupée par Bam HI chez Papio papio et P. cynocephalus

Highly repeated DNA sequences from two baboon species (Papio papio and P. cynocephalus) have been compared using restriction endonucleases. The two species share a 343 base pairs tandemly repeated DNA, that is cut once by Bam HI. Papio cynocephalus differs from P. papio by loss of an EcoRI star site in the repeated sequence.     

中国西北地区天然胡杨群体遗传多样性及核心保护单元的构建

胡杨(Populus euphratica)是极端干旱荒漠区的珍稀乔木树种。为了确定天然胡杨群体遗传多样性保护单元并挖掘优异的种质资源, 本研究以中国西北地区新疆、青海、甘肃、宁夏、内蒙古的58个天然胡杨群体为研究对象, 利用120个位点的SNPs标记对这些胡杨群体进行群体遗传结构和遗传多样性分析, 并根据不同群体间Nei’s遗传相似度, 采用逐步聚类优先取样法对初始群体、遗传多样性保护单元和剩余群体进行t检验。群体结构和主成分分析表明, 胡杨群体可分为新疆南疆(SX)、新疆北疆(NX)、青海(QH)和混合群(甘肃、宁夏和内蒙古混合群, GNM) 4个分支, 遗传多样性分析表明新疆南疆(SX)遗传多样性高于其他群体。分子方差分析(AMOVA)表明天然胡杨群体的遗传变异主要分布在各个群体内。构建了天然胡杨群体一级核心保护单元3个群体(CU3), 二级核心保护单元33个群体(CU33)。南疆存在较多优异抗逆的天然胡杨古树资源, 南疆分布区的平均遗传多样性水平最高。综上所述, 南疆地区胡杨古树遗传多样性整体高于北疆及疆外地区, 结合新疆地区干旱严重指数等生境信息, 建议加大对南疆胡杨古树群体的保护力度, 重视北疆胡杨林的更新换代。     

环境因子对桂西南蚬木林下植被物种多样性变异的解释

探索林下植被分布格局及其影响因素, 对于天然林保护和森林生物多样性维持机制研究具有重要意义。本文以桂西南喀斯特地区不同蚬木(Excentrodendron tonkinense)天然成熟林为研究对象, 采用植物群落样方调查、单因素方差分析、Pearson相关分析和冗余分析(RDA)等方法, 研究了8个县市蚬木天然成熟林林下植被物种多样性的变异及其对土壤、地形和光照等环境因子的响应。结果表明, 林下植被中灌木层优势种主要有越南槐(Sophora tonkinensis)、鹅掌柴(Schefflera heptaphylla)、毛果翼核果(Ventilago calyculata), 以及乔木层幼苗如蚬木、广西澄广花(Orophea anceps)、岩樟(Cinnamomum saxatile)、金丝李(Garcinia paucinervis)等, 主要来自豆科、五加科、鼠李科、椴树科、番荔枝科、樟科、藤黄科和大戟科等; 草本层优势种主要有肾蕨(Nephrolepis cordifolia)、石山棕(Guihaia argyrata)、崖姜(Pseudodrynaria coronans)、柔枝莠竹(Microstegium vimineum)、水蔗草(Apluda mutica)、沿阶草(Ophiopogon bodinieri)等, 主要来自肾蕨科、棕榈科、槲蕨科、禾本科、百合科、铁角蕨科和鳞毛蕨科等。土壤pH值、土壤含水量(SWC)、土壤全钾(TK)、土壤全磷(TP)和坡度(SLO)是林下植被物种多样性的主要影响因素, 它们分别解释了林下植被物种多样性32.3%、16.1%、9.7%、8.6%和8.6%的变异。灌木丰富度、灌木多样性指数与TK、SWC、土壤pH值和TP显著负相关, 而草本丰富度、草本多样性指数则与TK显著正相关; 灌木密度、灌木盖度与土壤pH值显著正相关, 草本密度与SWC和TK显著正相关, 草本盖度与TP、TK显著正相关, 与坡度显著负相关。土壤和地形因素是影响林下植被物种多样性变异的最主要因素, 而林分冠层结构的影响较小, 土壤各因素对林下植被物种多样性的影响高于地形因素。