Dynamics of diatom colonization process in some rivers influenced by urban pollution (Hanoi, Vietnam)

Periphytic diatom communities’ colonization patterns were studied at three sampling stations of the Red–Nhue–Tolich hydrosystem presenting different urban pollution levels by using artificial substrates for 6 weeks in dry season 2005. Structural characteristics of periphytic diatoms developed on glass substrates at each sampling site were followed and compared. This experiment showed, through various general criteria (total diatom density, dry weight biomass) and specific criteria (relative diatom abundances, indices) that the structure of benthic diatoms developed on these substrates was strongly affected by pollution as early as the second week of colonization. Communities exposed to heavily and moderately polluted sites contained species which are known to be saprophilous or tolerant to organic pollution such as Nitzschia umbonata, Nitzschia palea, Cyclotella meneghiniana, Eolimna minima. Growth inhibition of diatom communities at the heavily polluted site was mostly related to a strong increase of organic load rather than to low metallic input, though metallic (Cd and Zn) burdens have been successfully quantified in the biofilms developed at the three studied sites. Nevertheless, no significant difference in species richness and diversity index between colonization duration times was observed. Based on values of diatom indices Indice de Polluosensibilité (IPS) and diatom assemblage index to organic water pollution (DAIPo), water quality could be classified as medium quality at Red site, polluted at NT₂ and heavily polluted at TL. Thus, the use of diatoms as a tool for water assessment appears suitable for monitoring rivers in Vietnam, as it is in several other countries.     

EFFECTS OF LIGHT AND SUBSTRATE ON THE BENTHIC DIATOMS IN AN OLIGOTROPHIC LAKE: A COMPARISON BETWEEN NATURAL AND ARTIFICIAL SUBSTRATES1

Benthic diatoms form a particularly important community in oligotrophic lakes, but factors influencing their distribution are not well known. This study reports the depth distribution of living motile and total diatoms (living plus dead diatoms) on both natural (from sand to fine organic mud) and artificial substrates in an oligotrophic lake. On artificial substrates, motile diatom densities peaked in abundance (24–30 cells · mm^?2) between 0.6 and 1.9 m depth; on natural sediment surfaces, motile diatoms were generally more numerous and peaked in abundance (925 cells · mm^?2) at 1.3 m depth. Total diatom densities on artificial substrates were highest (1260 valves · mm^?2) at 0.6 m depth, with very low values below 3 m depth; on natural sediment surfaces, total diatom abundances were generally much higher (21600 valves · mm^?2) at 3 m depth and declined gradually with depth. Significant relationships were found between light and diatom densities on the artificial substrate. Ordination analysis indicated that substrate type significantly correlated with the variation of diatom composition on artificial and natural substrates. Our results suggest that in oligotrophic lakes, light influences benthic diatom abundance, whereas substrate type has more influence on benthic diatom composition.     

空间层次及人工基质对着生藻类建群特性的影响

为全面了解着生藻类在建群中群落变化的生态学特性,揭示着生藻类的建群规律,在以丝状藻类为优势藻的生态塘中,采用花岗岩和瓷砖为附着材料,设置水体底部和中部为附着位点,进行频次为10d的采样分析。结果表明,生态塘中共检出8门73属117种着生藻类,其中以硅藻、蓝藻、绿藻为优势类群。同时不同人工基质和不同空间层次条件下着生藻类的建群特征较一致,早期以单细胞硅藻如舟形藻(Navicula sp.)、脆杆藻(Fragilaria sp.)、曲壳藻(Achnanthes sp.)等为优势,后期以丝状藻类如鞘丝藻(Lyngbya sp.)、颤藻(Oscillatoria sp.)、伪鱼腥藻(Pseudanabaena sp.)等为优势;研究结果发现不同人工基质(花岗岩和瓷砖)对着生藻类的种类组成、细胞密度、生物量和藻类多样性无显著影响,花岗岩和瓷砖上附着的着生藻类具有较高的相似性;但不同的空间层次对着生藻类建群特征影响明显,水体底部具有更多的硅藻种类数,中部具有更多的绿藻,随着建群时间的发展,蓝藻比例不断增加;就生物量而言,底部的着生藻类叶绿素a显著高于水体中部,但两者的细胞密度无显著性差异;随着建群过程的发展,水体底部的着生藻类生物量达峰值所需的时间比中部更长。通过相关性分析,生态塘中着生藻类的生长主要受总磷的影响。     

Emigration and immigration can be important determinants of benthic diatom assemblages in streams

SUMMARY.

• 1 Interspecific differences in diatom abundances in stream drift (plankton), immigration, and natural benthic assemblages were compared to assess the importance of emigration and immigration in benthic diatom community dynamics. Water samples were collected throughout a 24-h period to measure diel changes in diatom drift abundances and to estimate benthic diatom emigration rates. Immigration was assessed with 24-h colonization of bare tiles.
• 2 Dissimilarity in species composition of drift, immigration, and natural substrate assemblages indicated differential emigration and immigration among diatom species.
• 3 A mathematical model indicated that reproduction by diatoms in the plankton could not account for diel drift peaks and that diel variation in drift was an informative measure of benthic diatom emigration.
• 4 Emigration and immigration of some species constituted substantial proportions of diatom abundances on natural substrata. We conclude that emigration into the drift and immigration onto substrata can be important processes that regulate benthic diatom species composition and standing crop in streams.

     

广东鉴江水系底栖硅藻多样性与时空分布特征

为了解广东省鉴江水系底栖硅藻多样性和时空分布特征,对全流域进行了底栖硅藻采样调查。结果表明,从19个采样点4次采样中共检出底栖硅藻10科52属242种,其中舟形藻属(Navicula)、菱形藻属(Nitzschia)和异极藻属(Gomphonema)是优势类群,出现频次和相对丰度较高。硅藻多样性指数(丰富度、真香农多样性指数和真辛普森多样性指数)随河流等级呈现一定的空间分布特征,但它们季节变化不明显。底栖硅藻群落相异性在上游和下游河段较高,从一级到三级河流递减,四级河流又增加。底栖硅藻群落结构空间变化明显,季节变化显著。群落丰富度的稀疏曲线表明,热带河流底栖硅藻群落以400个体计数,不能完整反映底栖硅藻多样性。这些为鉴江水系河流健康监测和水生态保护奠定了基础。     

Depth distribution of photosynthetic pigments and diatoms in the sediments of a microtidal fjord

The depth distribution of photosynthetic pigments and benthic marine diatoms was investigated in late spring at three different sites on the Swedish west coast. At each site, sediment cores were taken at six depths (7–35 m) by scuba divers. It was hypothesized that (1) living benthic diatoms constitute a substantial part of the benthic microflora even at depths where the light levels are <1% of the surface irradiance, and (2) the changing light environment along the depth gradient will be reflected in (a) the composition of diatom assemblages, and (b) different pigment ratios. Sediment microalgal communities were analysed using epifluorescence microscopy (to study live cells), light microscopy and scanning electron microscopy (diatom preparations), and HPLC (photosynthetic pigments). Pigments were calculated as concentrations (mg m^–2) and as ratios relative to chlorophyll a. Hypothesis (1) was accepted. At 20 m, the irradiance was 0.2% of surface irradiance and at 7 m, 1%. Living (epifluorescent) benthic diatoms were found down to 20 m at all sites. The cell counts corroborated the diatom pigment concentrations, decreasing with depth from 7 to 25 m, levelling out between 25 and 35 m. There were significant positive correlations between chlorophyll a and living (epifluorescent) benthic diatoms and between the diatom pigment fucoxanthin and chlorophyll a. Hypothesis (2) was only partly accepted because it could not be shown that light was the main environmental factor. A principal component analysis on diatom species showed that pelagic forms characterized the deeper locations (25–35 m), and epipelic–epipsammic taxa the shallower sites (7–20 m). Redundancy analyses showed a significant relationship between diatom taxa and environmental factors – temperature, salinity, and light intensities explained 57% of diatom taxa variations.     

Photosynthetic activity of benthic diatoms in response to different temperatures

The photosynthetic activities of benthic diatoms in response to temperature changes were assessed by measuring chlorophyll fluorescence kinetics. Small benthic diatom species with large surface area to volume (SA/V) ratios responded to increasing temperature differently from large diatoms, since larger ratios caused lower photosynthetic activity under high-temperature conditions. The small SA/V ratios of large cells may be advantageous in benthic environments under adverse conditions such as high temperature and/or strong light. A size-dependent differential response of benthic diatoms to changes in environmental factors such as temperature may result in an altered distribution of the different diatom communities.     

Flood disturbance effects on benthic diatom assemblage structure in a semiarid river network

Disturbances such as floods and droughts play a central role in determining the structure of riverine benthic biological assemblages. Extreme disturbances from flash floods are often restricted to part of the river network and the magnitude of the flood disturbance may lessen as floods propagate downstream. The present study aimed to characterize the impact of summer monsoonal floods on the resistance and resilience of the benthic diatom assemblage structure in nine river reaches of increasing drainage size within the Gila River in the southwestern United States. Monsoonal floods had a profound effect on the diatom assemblage in the Gila River, but the effects were not related to drainage size except for the response of algal biomass. During monsoons, algal biomass was effectively reduced in smaller and larger systems, but minor changes were observed in medium systems. Resistance and resilience of the diatom assemblage to floods were related to specific species traits, mainly to growth forms. Tightly adhered, adnate and prostrate species (Achnanthidium spp., Cocconeis spp.) exhibited high resistance to repeated scour disturbance. Loosely attached diatoms, such as Nitzschia spp. and Navicula spp., were most susceptible to drift and scour. However, recovery of the diatom assemblage was very quick indicating a high resilience, especially in terms of biomass and diversity. Regional hydroclimatic models predict greater precipitation variability, which will select for diatoms resilient to bed‐mobilizing disturbances. The results of this study may help anticipate future benthic diatom assemblage patterns in the southwestern United States resulting from a more variable climate.     

A comparison of epiphytic diatom communities on <Emphasis Type="Italic">Plocamium cartilagineum</Emphasis> (Plocamiales,Florideophyceae) from two Antarctic areas

Our understanding of diatoms, one of the most important Antarctic primary producers, is based mostly on investigations of plankton, sea-ice, and sediment samples. Herein, we contribute to the limited research devoted to benthic Antarctic diatoms by presenting a study on epiphytic diatom communities sampled in two remote Antarctic regions: Admiralty Bay (maritime Antarctica, Antarctic Peninsula) and Terra Nova Bay (Ross Sea). Recent studies have demonstrated that the most critical factor for the local epiphytic diatom communities was the nature of the substrate. In order to eliminate this factor so we could evaluate other potential controls, we sampled epiphytic diatoms from only one substrate that is common to both regions: the macroalgae Plocamium cartilagineum (L.) Dixon. Thalli of P. cartilagineum and their associated microalgal community was collected in January 2011 (Admiralty Bay) and 2012 (Terra Nova Bay) from a water depth of 5–25 m. Dehydrated macroalgal pieces were placed on stubs and sputter-coated, which allowed observation of diatoms attached to the substrate in their original position using scanning electron microscopy. A total of 72 taxa were observed, of which 31 taxa were common to both regions. Cell abundance and diatom growth form dominance were significantly different in Admiralty Bay and Terra Nova Bay samples. Total diatom abundance was higher in Admiralty Bay samples, dominated by adnate diatoms (Cocconeis spp.), but the number of taxa found as well as the values of ecological indices were higher for samples from the Ross Sea, where motile forms were dominant (Navicula spp.). Our results suggest that Antarctic shallow-water benthic habitats may present a high degree of microniche heterogeneity and highlight the need of fine-scale analyses in microbial studies. We also suggest grazers as a factor that contributes greatly to the observed differences.     

Relationships Between Environmental Variables and Benthic Diatom Assemblages in California Central Valley Streams (USA)

This study examines distributional patterns of benthic diatom assemblages in relation to environmental characteristics in streams and rivers in the California Central Valley ecoregion. Benthic diatoms, water quality, and physical habitat conditions were characterized from 53 randomly selected sites. The stream sites were characterized by low mid-channel canopy cover and high channel substrate embeddedness. The waters at these sites were enriched with minerals and turbidity varied from 1.3 to 185.0 NTU with an average of 13.5 NTU. A total of 249 diatom taxa were identified. Average taxa richness was 41 with a range of 7–76. The assemblages were dominated by Staurosira construens (11%), Epithemia sorex (8%), Cocconeis placentula (7%), and Nitzschia amphibia (6%). Multivariate analyses (cluster analysis, classification tree analysis, and canonical correspondence analysis) all showed that benthic diatom assemblages were mainly affected by channel morphology, in-stream habitat, and riparian conditions. The 1st CCA axis negatively correlated with mean wetted channel width (r = −0.66) and thalweg depth (r = −0.65) (Table 4). The 2nd axis correlated with % coarse substrates (r=0.60). Our results suggest that benthic diatoms can be used for assessing physical habitat alterations in streams.     

Effects of nutrient (N,P, C) enrichment upon the littoral diatom community of an oligotrophic high-mountain lake

The effects of nutrient additions upon the epilithic diatom communities and the algal standing crop were investigated in the oligotrophic, softwater Lake Piccolo Naret, situated in the Swiss alps. Nutrient-diffusing flower pot substrates were filled with either N (0.15 mol NaNO₃), P (0.015 mol Na₂HPO₄) or C (0.15 mol NaHCO₃) or combinations of them. Twenty-five pots representing eight treatments were placed into the lake in July 1991 and sampled after 42 days of exposure.On the surfaces of all pots containing P we measured higher algal biomasses as on the control pots. The chlorophyll-a maximum of 12.9 µg cm^{– 2} was obtained on NPC pots (0.47 µg cm^{– 2} on control pots). On pots with P, NP or NPC supply high amounts of green algae were detected, also reflected in an increased chl-b/chl-c ratio related to the controls which showed algal communities dominated by diatoms.The diatom communities on the control pots as well as on the pots with N, P and NP had a structure similar to the epilithic community in Lake Piccolo Naret (dominance identity > 58 %). However, the community structures of the diatoms from pots with C addition (C, NC, PC and NPC) differed considerably. This is discussed in view of the cell densities of dominant diatom species. For further comparisons the results of two additional high-mountain lakes are used. By means of a cluster analysis it could be shown that epilithic diatom communities were considerably influenced by C addition, while N and P supply were of minor importance.     

Effect of eight benthic diatoms as feed on the growth of red abalone (Haliotis rufescens) postlarvae

The growth rate of abalone post larvae of Haliotis rufescens fed ad libitum with a benthic monoalgal diatom culture maintained as monocultures on a semi-commercial scale, was evaluated and correlated with the biochemical composition of the diatoms. The cell size (7.0 × 4.0 μm to 21.0 × 7.5 μm), protein percentage (7.42% to 13.66%), and ash content (49.03% to 59.61%) were different among diatom strains; lipid percentage, nitrogen free extract, and energy content (Kcal g⁻¹) were similar among diatom strains. The values of essential and non-essential amino and fatty acids composition differed among diatom strains. Differences in the abalone shell length and orthogonal analyses revealed postlarval growth was dependent on the quality of the food source. Postlarvae abalone displaying the longest shell lengths were fed Nitzschia thermalis var. minor and Amphiprora paludosa var. hyalina (1,712.0 ± 61 μm and 1,709 ± 67 μm, respectively), followed by Navicula incerta (1,413.3 ± 43 μm). The fatty acid content of benthic diatoms and abalone growth rate were not correlated.     

Does a warmer lake mean smaller benthic algae? Evidence against the importance of temperature–size relationships in natural systems

Ectotherms decrease in size with increasing ambient temperature. Temperature–size relationships (TSR) have been observed experimentally in a wide range of animals, algae, protozoans and bacteria. However, it is still unclear whether temperature is an important factor controlling the size of organisms in natural populations. In this study, we used natural variability in water temperature in the nearshore areas of a single lake to test TSR in populations of benthic diatoms. We deployed standard tile substrates at 5 m depth (similar light availability) at cold and warm sites that were exposed to different hydrodynamic forces. We compared cell sizes of three species of diatoms (Achnanthidium minutissimum, Gomphonema acuminatum and Gyrosigma acuminatum) at these sites. Counter to the TSR, diatom cells at warm sites were either larger (Achnanthidium, Gomphonema) or similar in size (Gyrosigma) compared to those at colder sites. Diatom size was also related to site exposure (hydrodynamic forces), but differently for species with different architectures. TSR were not detectable in the field for these three species of benthic diatom, even when tested within a single ecosystem at a given time of the year. The size of benthic diatoms, however, varied in a predictable way between sites, and such differences could affect the functioning of these primary producers in different parts of the littoral zone.     

SHORT-TERM STANDING CROP AND DIVERSITY OF PERIPHYTIC DIATOMS IN A EUTROPHIC RESERVOIR1

Adverse weather and resultant turbulence caused sloughing of attached diatom communities during the first two weeks of colonization on artificial substrates. In contrast to Pacific macroalgal systems, older communities (8–12 d) were the most affected by wave action. Ash-free dry weight of the periphyton and diatom cell density generally increased, except following periods of high turbulence when losses of up to 80% occurred. The maximum cell density (4 × 10⁵ diatoms · cm^?2) and ash-free dry weight (2.9 mg · cm^?2) are among the highest reported for similar conditions. Percent transmittance through the growth layer correlated significantly with cell density and ash-free dry weight and is recommended as a rapid method for measuring the relative accumulation of periphyton. Diatom diversity generally increased throughout the study period and did not clearly reflect the effects of disturbance as did standing crop. Comparisons of diatom diversity and community composition indicated that the three overlapping growth series were not significantly different and samples collected on the same date were not more similar than those of identical age. Combined with previous evidence, the present study indicates that the first two weeks of substrate exposure in the summer represented a colonization phase followed by rapid microsuccession.     

Composition and seasonality of benthic invertebrates,and drift in the Naro Moru River,Kenya

A survey was carried out to establish the nature and composition of the benthos along the Naro Moru, a tropical river in central Kenya using artificial substrate baskets, from November 1986 to October 1987. A clear longitudinal zonation existed for Diptera and Ephemeroptera which were the major benthic taxa. Maximum colonization took place after ten days of exposure. Seasonal variations in abundance were also observed. All taxa collected from the bottom samples were also collected in the drift samples, but the percentage composition of the benthos showed variations with that of the drift. Simulium sp. dominated the benthos whilst Baetis spp. dominated the drift. There was a positive correlation between drift rate and benthic fauna density.     

Epiphytic diatom communities on intertidal seaweeds from Iceland

Epiphytic diatom communities on macroalgae from Iceland coastal waters were investigated during July 2005. Ten species of seaweeds have been collected belonging to brown, red and green algae. The analysis of epiphytic diatom community was carried out under scanning electron microscopy. The epiphytic diatom abundances varied from 7 ± 5 to 7524 ± 3491 cells mm⁻². Erect growth forms were the most abundant, representing on average 50% of the total diatoms (Achnanthes cf. brevipes var. parvula, Tabularia investiens, T. fasciculata, Hyalosira cf. delicatula, Gomphoseptatum aestuarii, Pseudogomphonema plinskii), followed by adnate (29%) (Cocconeis stauroneiformis, C. scutellum) and motile forms (21%) (Nitzschia cf. amphibia and Navicula perminuta). Highly branched seaweeds with articulated thallus surface, offering a number of microenvironments to be occupied by the epiphytes, showed a high level of colonization, mainly due to erect and motile diatoms. Flat thalli with smooth surface allowed for the growth of mainly erect diatoms.     

Biofilm diatom community structure: Influence of temporal and substratum variability

Abstract

Diatoms, which are early autotrophic colonisers, are an important constituent of the biofouling community in the marine environment. The effects of substratum and temporal variations on the fouling diatom community structure in a monsoon-influenced tropical estuary were studied. Fibreglass and glass coupons were exposed every month for a period of 4 days and the diatom population sampled at 24 h intervals, over a period of 14 months. The planktonic diatom community structure differed from the biofilm community. Pennate diatoms dominated the biofilms whilst centric diatoms were dominant in the water column. Among the biofilm diatoms, species belonging to the genera Navicula, Amphora, Nitzschia, Pleurosigma and Thalassionema were dominant. On certain occasions, the influence of planktonic blooms was also seen on the biofilm community. A comparative study of biofilms formed on the two substrata revealed significant differences in density and diversity. However species composition was almost constant. In addition to substratum variations, the biofilm diatom community structure also showed significant seasonal variations, which were attributed to physico-chemical and biological changes in both the water and substratum. Temporal variations in the tychopelagic diatoms of the water were also observed to exert an influence on the biofilm diatom community. Variations in diatom communities may determine the functional ecosystem of the benthic environment.     

Eukaryotic pathogens (Chytridiomycota and Oomycota) infecting marine microphytobenthic diatoms – a methodological comparison

Using sediment samples from the Solthörn tidal flat (southern North Sea, Germany), collected in bi‐weekly intervals from June to July 2012, a range of qualitative and quantitative screening methods for oomycete and chytrid pathogens infecting benthic diatoms were evaluated. Pre‐treatment of sediment samples using short ultrasound pulses and gradient centrifugation, in combination with CalcoFluor White, showed the best results in the visualization of both pathogen groups. The highest number of infected benthic diatoms was observed in mid July (5.8% of the total benthic diatom community). Most infections were caused by chytrids and, in a few cases, oomycetes (Lagenisma Drebes (host: Coscinodiscus radiatus Ehrenberg) and Ectrogella Zopf (hosts: Dimeregramma minor in Pritchard and Gyrosigma peisonis). Among the chytrids, sporangium morphology indicated the presence of five different morphotypes, infecting mainly epipelic taxa of the orders Naviculales (e.g., Navicula digitoradiata) and Achnanthales (e.g., Achnanthes brevipes Agardh). The presence of multiple pathogens in several epipelic diatom taxa suggests a significant role for fungal parasitism in affecting microphytobenthic diatom succession.     

The amino acid and gross composition of marine diatoms potentially useful for mariculture

The amino acid and gross compositions of three benthic diatoms (Cylindrotheca fusiformis Reimann and Lewin, Navicula jeffreyi Hallegraeff et Burford and Nitzschia closterium (Ehr. W. Smith) and three chain-forming diatoms (Lauderia annulata Cleve, Skeletonema costatum (Greville) Cleve and a tropical Skeletonema sp. (CS-252)), were determined during late-logarithmic growth phase.Four of the six species were rich in protein, ranging from 31% (S. costatum) to 38% (N. closterium) of the dry weight, and contained 4.9 to 6.5% carbohydrate and 9.4 to 18% ash. The other two species, C. fusiformis and L. annulata contained only 16% protein but had nearly twice the total carbohydrate (11 to 12%) and two to three times the ash (29 to 35%) of the other species. All species contained a similar percentage of lipid (18 to 20%), and a high protein quality based on their total amino acid composition.The usefulness of these diatoms for mariculture will be determined by growth rates, gross composition and acceptability to the animal. N. closterium had the fastest growth rates of the benthic mat-forming diatoms, it was rich in protein, and it may be a good candidate for abalone culture. The two Skeletonema spp. had the fastest growth rates of the chain-forming diatoms, and are already widely used for prawn larval culture in Australia. Feeding trials are now necessary to confirm the high nutritional value of these diatom species for specific animals.     

Distinct glycoconjugate cell surface structures make the pelagic diatom Thalassiosira rotula an attractive habitat for bacteria

Interactions between marine diatoms and bacteria have been studied for decades. However, the visualization of physical interactions between these diatoms and their colonizers is still limited. To enhance our understanding of these specific interactions, a new Thalassiosira rotula isolate from the North Sea (strain 8673) was characterized by scanning electron microscopy and confocal laser scanning microscopy (CLSM) after staining with fluorescently labeled lectins targeting specific glycoconjugates. To investigate defined interactions of this strain with bacteria the new strain was made axenic and co-cultivated with a natural bacterial community and in two- or three-partner consortia with different bacteria of the Roseobacter group, Gammaproteobacteria and Bacteroidetes. The CLSM analysis of the consortia identified six out of 78 different lectins as very suitable to characterize glycoconjugates of T. rotula. The resulting images show that fucose-containing threads were the dominant glycoconjugates secreted by the T. rotula cells but chitin and to a lesser extent other glycoconjugates were also identified. Bacteria attached predominantly to the fucose glycoconjugates. The colonizing bacteria showed various attachment patterns such as adhering to the diatom threads in aggregates only or attaching to both the surfaces and the threads of the diatom. Interestingly the colonization patterns of single bacteria differed strikingly from those of bacterial co-cultures, indicating that interactions between two bacterial species impacted the colonization of the diatom. Our observations help to better understand physical interactions and specific colonization patterns of distinct bacterial mono- and co-cultures with an abundant diatom of costal seas.