Colonization Patterns of Insects Breeding in Wood-Decaying Fungi

Many insects dependent on dead wood are considered threatened by modern forestry. This may partly be due to substrate patches being too widely scattered to be effectively colonized. We studied how rates of colonization by insect species breeding in polypore fruiting bodies are affected by interpatch distance and habitat matrix characteristics. In field experiments, fruiting bodies of Fomitopsis pinicola and Fomes fomentarius were put out at different distances from natural sources of insects. The anobiid beetles Dorcatoma spp. were the most successful colonizers of distant patches, and they readily flew over open fields. Cis beetles were less successful colonizers, despite their generally higher abundance. We hypothesize that the Dorcatoma spp. are inferior competitors, but superior colonizers of distant resources compared with Cis spp. The flies Leucophenga quinquemaculata (Drosophilidae) and Medetera impigra (Dolichopodidae) appeared to be more affected by distance than the beetles studied in their colonization of fungal fruiting bodies. Lower rates of parasitism were recorded on distant patches, and parasitoids appeared more affected by distance than their hosts. Most of the insect species studied can probably persist in the managed forest landscape if suitable breeding substrate is created continuously on a 1 km² scale.     

Highly Efficient Production of Laccase by the Basidiomycete Pycnoporus cinnabarinus

An efficient transformation and expression system was developed for the industrially relevant basidiomycete Pycnoporus cinnabarinus. This was used to transform a laccase-deficient monokaryotic strain with the homologous lac1 laccase gene placed under the regulation of its own promoter or that of the SC3 hydrophobin gene or the glyceraldehyde-3-phosphate dehydrogenase (GPD) gene of Schizophyllum commune. SC3-driven expression resulted in a maximal laccase activity of 107 nkat ml⁻¹ in liquid shaken cultures. This value was about 1.4 and 1.6 times higher in the cases of the GPD and lac1 promoters, respectively. lac1-driven expression strongly increased when 25 g of ethanol liter⁻¹ was added to the medium. Accordingly, laccase activity increased to 1,223 nkat ml⁻¹. These findings agree with the fact that ethanol induces laccase gene expression in some fungi. Remarkably, lac1 mRNA accumulation and laccase activity also strongly increased in the presence of 25 g of ethanol liter⁻¹ when lac1 was expressed behind the SC3 or GPD promoter. In the latter case, a maximal laccase activity of 1,393 nkat ml⁻¹ (i.e., 360 mg liter⁻¹) was obtained. Laccase production was further increased in transformants expressing lac1 behind its own promoter or that of GPD by growth in the presence of 40 g of ethanol liter⁻¹. In this case, maximal activities were 3,900 and 4,660 nkat ml⁻¹, respectively, corresponding to 1 and 1.2 g of laccase per liter and thus representing the highest laccase activities reported for recombinant fungal strains. These results suggest that P. cinnabarinus may be a host of choice for the production of other proteins as well.     

Laccase and Tyrosinase in some Wood-rotting Fungi

Several species of wood-rotting fungi have been examined forphenol oxidases. Polystictus sanguineus, a white rot, produceslaccase, secreting it into the medium. This enzyme has beenstudied and partly purified. Phellinus cryptarum, another whiterot, shows varied production of phenol oxidase according tothe medium used for growth. Laccase only is produced on maltmedium, whereas laccase and tyrosinase result after growth ona glucose and salt medium. Lentinus lepideus, a brown rot, producestyrosinase on several media and this enzyme appears to be entirelyintracellular.     

Demonstration of Laccase in the White Rot Basidiomycete Phanerochaete chrysosporium BKM-F1767

It has been widely reported that the white rot basidiomycete Phanerochaete chrysosporium, unlike most other white rot fungi, does not produce laccase, an enzyme implicated in lignin biodegradation. Our results showed that P. chrysosporium BKM-F1767 produces extracellular laccase in a defined culture medium containing cellulose (10 g/liter) and either 2.4 or 24 mM ammonium tartrate. Laccase activity was demonstrated in the concentrated extracellular culture fluids of this organism as determined by a laccase plate assay as well as a spectrophotometric assay with ABTS [2,2(prm1)-azinobis(3-ethylbenzathiazoline-6-sulfonic acid)] as the substrate. Laccase activity was observed even after addition of excess catalase to the extracellular culture fluid to destroy the endogenously produced hydrogen peroxide, indicating that the observed activity is not due to a peroxidase. Sodium dodecyl sulfate-polyacrylamide gel electrophoresis followed by activity staining with ABTS revealed the presence of a laccase band with an estimated M(infr) of 46,500.     

Degradation of Tribromophenol by Wood-Decaying Fungi and the 1,2-Dihydroxybenzene-Assisted Fenton Reaction

The degradation of 2,4,6-tribromophenol (TBP) by biological and chemical treatments was studied. Biological treatment involved the use of Laetoporeus sulfureus, Gloephyllum trabeum, and Ganoderma australe in liquid culture. Despite the inhibitory effects of TBP on the fungal growth, these fungi were able to degrade TBP after 15 days of biotreatment. At 66, 116, and 183 μ M TBP, the degradation by G. australe was the most efficient (71% to 77%), whereas G. trabeum and L. sulfureus degraded between 50% and 60% of three TBP concentrations. The removal of organic bromine reached values of 50% in all cases. The chemical treatment (1,2-dihydroxybenzene-assisted Fenton reaction) achieved up to 90% of TBP degradation. However, only 40% of TBP was mineralized and the toxicity level did not undergo changes during the chemical treatment. On the other hand, a 30% reduction in toxicity was obtained with a combined chemical-biological treatment.     

Molecular Characterization of Laccase Genes from the Basidiomycete Coprinus cinereus and Heterologous Expression of the Laccase Lcc1

A laccase from Coprinus cinereus is active at alkaline pH, an essential property for some potential applications. We cloned and sequenced three laccase genes (lcc1, lcc2, and lcc3) from the ink cap basidiomycete C. cinereus. The lcc1 gene contained 7 introns, while both lcc2 and lcc3 contained 13 introns. The predicted mature proteins (Lcc1 to Lcc3) are 58 to 80% identical at the amino acid level. The predicted Lcc1 contains a 23-amino-acid C-terminal extension rich in arginine and lysine, suggesting that C-terminal processing may occur during its biosynthesis. We expressed the Lcc1 protein in Aspergillus oryzae and purified it. The Lcc1 protein as expressed in A. oryzae has an apparent molecular mass of 66 kDa on sodium dodecyl sulfate-polyacrylamide gel electrophoresis and absorption maxima at 278 and 614 nm. Based on the N-terminal protein sequence of the laccase, a 4-residue propeptide was processed during the maturation of the enzyme. The dioxygen specificity of the laccase showed an apparent K_m of 21 ± 2 μM and a catalytic constant of 200 ± 10 min⁻¹ for O₂ with 2,2′-azinobis(3-ethylbenzothiazoline-6-sulfonic acid) as the reducing substrate at pH 5.5. Lcc1 from A. oryzae may be useful in industrial applications. This is the first report of a basidiomycete laccase whose biosynthesis involves both N-terminal and C-terminal processing.     

天津八仙山国家级自然保护区野生狍集群模式和时空活动规律

2017年6月—2019年3月,以天津八仙山国家级自然保护区为研究地点,首次应用红外相机技术综合关注野生狍Capreolus pygargus的集群模式和时空活动规律.结果发现,狍表现出5种集群模式,以单雄和单雌模式为主;各种集群模式的出现频次呈显著的季节差异(χ2=10.867,df=3,P=0.012)、温度区段差...     

高酶活菌株的筛选及漆酶特性

通过Bavendamn氏反应和液体发酵实验筛选出漆酶高产菌株 ,并对其产酶条件和酶活性进行了研究。结果表明 71株实验真菌中有 64株Bavendamn氏反应呈阳性 ,且阳性菌株都具有漆酶活性 ;不同菌株产酶培养基最适碳源、氮源不同 ,采绒革盖菌以淀粉为碳源、干酪素为氮源 ,毛栓菌以麦草粉为碳源、硫酸铵为氮源 ,有利于酶的分泌 ;不同来源漆酶性质不尽相同 ,采绒革盖菌漆酶最适酶解温度为 2 5℃ ,最适酶解pH值为4.6,毛栓菌则分别为 3 0℃和 pH 4.0 ;K+ ,Zn2 + 等对 2种漆酶均有激活作用 ,Ag+ 则能明显抑制漆酶活性。     

Spatiotemporal Patterns and Predictability of Cyberattacks

A relatively unexplored issue in cybersecurity science and engineering is whether there exist intrinsic patterns of cyberattacks. Conventional wisdom favors absence of such patterns due to the overwhelming complexity of the modern cyberspace. Surprisingly, through a detailed analysis of an extensive data set that records the time-dependent frequencies of attacks over a relatively wide range of consecutive IP addresses, we successfully uncover intrinsic spatiotemporal patterns underlying cyberattacks, where the term “spatio” refers to the IP address space. In particular, we focus on analyzing macroscopic properties of the attack traffic flows and identify two main patterns with distinct spatiotemporal characteristics: deterministic and stochastic. Strikingly, there are very few sets of major attackers committing almost all the attacks, since their attack “fingerprints” and target selection scheme can be unequivocally identified according to the very limited number of unique spatiotemporal characteristics, each of which only exists on a consecutive IP region and differs significantly from the others. We utilize a number of quantitative measures, including the flux-fluctuation law, the Markov state transition probability matrix, and predictability measures, to characterize the attack patterns in a comprehensive manner. A general finding is that the attack patterns possess high degrees of predictability, potentially paving the way to anticipating and, consequently, mitigating or even preventing large-scale cyberattacks using macroscopic approaches.     

担子菌地星菌丝体中一个新的甾醇酯

从担子菌地星(Astraeus hygrometricus)发酵培养菌丝体中分离得到一个新的多羟基甾醇酯,其化学结构通过波谱学方法包括二维核磁共振鉴定为:3β,5α-二羟基-(22E,24R)-麦角甾醇-7,22-二烯-6α-棕榈酸酯。同时还从该菌中分离得到其它三个甾醇类化合物。     

Partial Purification of Proteinase K Inhibitors from Liquid-Cultured Mycelia of the White Rot Basidiomycete Trametes versicolor

Novel protease inhibitors were isolated from liquid-cultured mycelia of the white rot fungus Trametes versicolor. Two bands of antiproteinase K activity, TvPI-A and TvPI-B, were detected in the crude cell extract by native polyacrylamide gel electrophoresis (PAGE). Proteins corresponding to TvPI-A were purified by heat treatment, anion-exchange chromatography, and gel filtration. Sodium dodecyl sulfate (SDS)-PAGE demonstrated the presence of three proteins with molecular masses of 14.5, 16.6, and 20 kDa, respectively. T. versicolor protease inhibitors suppressed the activity of proteinase K and, to a smaller extent, of Carlsberg subtilisin, whereas trypsin and chymotrypsins were not inhibited. The inhibitors were acidic proteins and showed remarkable heat stability. To our knowledge, this is the first report about proteinase K inhibitors from fungi.     

伞菌DNA简易序列分析引出的思考

目的:伞菌物种以子实体形态特征为分类依据,研究以菌丝体代替子实体进行种质资源鉴定的遗传证据。方法:以常见的食用伞菌香菇、平菇子实体的不同部位组织及其分离菌丝体为供试材料,制备了12个随机引物介导的RAPD-PCR指纹,把DNA指纹图谱转化为简易的序列数据,经生物信息处理软件比较分析。结果:香菇不同菌株子实体DNA相似性系数在0.886～0.986之间,平菇不同菌株子实体DNA相似系数在0.779～0.976之间。对于供试的单个子实体而言,香菇和平菇子实体的菌盖、菌褶、菌柄及其组织分离菌丝体,与以此为菌种栽培得到的子实体相比较,所获得的有限DNA指纹图谱全部相同。结论:揭示了香菇和平菇不同菌株的遗传多样性,初步反映了伞菌不同发育阶段在分子水平上的遗传变异和亲缘关系,争论了以菌丝体代替子实体使用RAPD手段进行种质资源鉴定与系统发育分析引出的真菌遗传问题。     

Microbial Anaerobic Demethylation and Dechlorination of Chlorinated Hydroquinone Metabolites Synthesized by Basidiomycete Fungi

The synthesis and degradation of anthropogenic and natural organohalides are the basis of a global halogen cycle. Chlorinated hydroquinone metabolites (CHMs) synthesized by basidiomycete fungi and present in wetland and forest soil are constituents of that cycle. Anaerobic dehalogenating bacteria coexist with basidiomycete fungi in soils and sediments, but little is known about the fate of these halogenated fungal compounds. In sediment microcosms, the CHMs 2,3,5,6-tetrachloro-1,4-dimethoxybenzene and 2,3,5,6-tetrachloro-4-methoxyphenol (TCMP) were anaerobically demethylated to tetrachlorohydroquinone (TCHQ). Subsequently, TCHQ was converted to trichlorohydroquinone and 2,5-dichlorohydroquinone (2,5-DCHQ) in freshwater and estuarine enrichment cultures. Screening of several dehalogenating bacteria revealed that Desulfitobacterium hafniense strains DCB2 and PCP1, Desulfitobacterium chlororespirans strain Co23, and Desulfitobacterium dehalogenans JW/DU1 sequentially dechlorinate TCMP to 2,3,5-trichloro-4-methoxyphenol and 3,5-dichloro-4-methoxyphenol (3,5-DCMP). After a lag, these strains demethylate 3,5-DCMP to 2,6-DCHQ, which is then completely dechlorinated to 1,4-dihydroquinone (HQ). 2,5-DCHQ accumulated as an intermediate during the dechlorination of TCHQ to HQ by the TCMP-degrading desulfitobacteria. HQ accumulation following TCMP or TCHQ dechlorination was transient and became undetectable after 14 days, which suggests mineralization of the fungal compounds. This is the first report on the anaerobic degradation of fungal CHMs, and it establishes a fundamental role for microbial reductive degradation of natural organochlorides in the global halogen cycle.     

Nitrogen Isotope Patterns in Alaskan Black Spruce Reflect Organic Nitrogen Sources and the Activity of Ectomycorrhizal Fungi

Global patterns in soil, plant, and fungal stable isotopes of N (δ¹⁵N) show promise as integrated metrics of N cycling, particularly the activity of ectomycorrhizal (ECM) fungi. At small spatial scales, however, it remains difficult to differentiate the underlying causes of plant δ¹⁵N variability and this limits the application of such measurements to better understand N cycling. We conducted a landscape-scale analysis of δ¹⁵N values from 31 putatively N-limited monospecific black spruce (Picea mariana) stands in central Alaska to assess the two main hypothesized sources of plant δ¹⁵N variation: differing sources and ECM fractionation. We found roughly 20% of the variability in black spruce foliar N and δ¹⁵N values to be correlated with the concentration and δ¹⁵N values of soil NH₄ ⁺ and dissolved organic N (DON) pools, respectively. However, ¹⁵N-based mixing models from 24 of the stands suggested that fractionation by ECM fungi obscures the ¹⁵N signature of soil N pools. Models, regressions, and N abundance data all suggested that increasing dependence on soil DON to meet black spruce growth demands predicates increasing reliance on ECM-derived N and that black spruce, on average, received 53% of its N from ECM fungi. Future research should partition the δ¹⁵N values within the soil DON pool to determine how choice of soil δ¹⁵N values influence modeled ECM activity. The C balance of boreal forests is tightly linked to N cycling and δ¹⁵N values may be useful metrics of changes to these connections.