Plant‐driven changes in soil microbial communities influence seed germination through negative feedbacks

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Opportunistic fungi in soils and surface air of a megalopolis (for the Tushino Region,Moscow)

The number and composition of opportunistic microscopic fungi was studied in soils and surface air (0.2 and 1.5 m above the surface) in the megalopolis districts (Tushino, Moscow) of different age of construction (6 and 40 years) and in urban recreational forests. The highest number (up to 1500 CFU/m³) determined by plating from air was found in the summer in new-built quarters. Direct count of fungal diaspores in airborne dust yielded significantly higher values (up to 4 × 10⁵/m³). The composition of the soil fungal population differed significantly from that of the air. In soil, the diversity of potentially pathogenic fungi was higher, while in air, their abundance was greater. The highest content of opportunistic fungi in soil and air was observed in spring and late summer-autumn, respectively. The fungi known as allergenic (mostly Cladosporium spp.) predominate in the air in autumn, especially in the new-built quarters.     

Evaluation of Pseudomonas aeruginosa Z5 for biocontrol of cotton seedling disease caused by Fusarium oxysporum

Plant growth-promoting bacteria-mediated biocontrol of plant pathogens is renowned to enhance the growth of the plants using different direct or indirect mechanisms. The goal of the present investigation was the evaluation of Pseudomonas aeruginosa Z5 isolated from cotton grown in Pakistani soils for the suppression of Fusarium oxysporum associated with cotton seedling disease. In dual culturing techniques, four bacterial strains inhibited fungal pathogens, i.e. F. oxysporum, Fusarium moniliforme, Fusarium solani and Rhizoctonia solani, significantly with percent inhibition ranging from 25% to 91.5%. P. aeruginosa Z5 showed maximum suppression of all the tested pathogens. Net-house experiments showed that the application of P. aeruginosa Z5 both separately and in combination with Bacillus fusiformis S10 significantly reduced the disease incidence by suppressing F. oxysporum (the causal agent of cotton seedling disease) up to 64–65% and improved the percent germination as compared to the infected control plants. The production of antibiotics, proteases and siderophores may be the contributing factors for its antagonistic properties. Highest bacterial population (8.9 CFU/g root) observed on roots of cotton plants inoculated with P. aeruginosa Z5 showed its good colonisation aptitudes even in the presence of high inoculation of soil with F. oxysporum. Confocal laser scanning microscopy supported the root colonisation of cotton plants with fluorescently labelled P. aeruginosa Z5. Because of innate fungicidal potential, growth promoting P. aeruginosa Z5 can be used as a bioinoculant and an antagonist to suppress the growth of cotton root-associated fungal pathogen.     

Fungal population in the atmosphere of Ismailia City

Fungal spore populations in the outdoor and indoor atmosphere of Ismailia have been studied during the period from March 1992 to May 1993. A total of 23 350 cfu and 73 species were recorded.Cladosporium cladosporioides, Aureobasidium pullulans andAspergillus flavus were the most abundant. The indoor and outdoor mycoflora showed marked quantitative and qualitative differences. In view of count, recorded species could be categorized into three groups as follows: (a) species showing higher counts in out-than indoor, (b) species showing the opposite trend i.e. lower counts in out-door than indoor, (c) species showing approximately equal counts in out- and indoor. Regarding seasonal periodicity, March and either September or October showed the highest count for both normal fungal flora (NFF) and opportunistic fungal flora (OFF). While January and July showed the lowest count of them both, May but not July was the lowest as for outdoor NFF.     

Fungal population in the atmosphere of Ismailia City

Fungal spore populations in the outdoor and indoor atmosphere of Ismailia have been studied during the period from March 1992 to May 1993. A total of 23 350 cfu and 73 species were recorded,Cladosporium cladosporioides, Aureobasidium pullulans andAspergillus flavus were the most abundant. The indoor and outdoor mycoflora showed marked quantitative and qualitative differences. In view of count, recorded species could be categorized into three groups as follows: (a) species showing higher counts in out- than indoor, (b) species showing the opposite trend i.e. lower counts in out-door than indoor, (c) species showing approximately equal counts in out- and indoor. Regarding seasonal periodicity, March and either September or October showed the highest count for both normal fungal flora (NFF) and opportunistic fungal flora (OFF). While January and July showed the lowest count of them both, May but not July was the lowest as for outdoor NFF.     

Preliminary survey of indoor and outdoor airborne microfungi at coastal buildings in Egypt

Forty six species and two sterile fungi and yeast species were isolated from samples collected both indoors and outdoors of coastal buildings located in an Egyptian coastal city. Twenty flats from ten buildings were investigated; children living in these buildings have been reported to suffer from respiratory illnesses. Samples were taken using a New Brunswick sampler (model STA-101) operating for 3.0 min at a flow rate of 6.0 l/min. Most of the species isolated have been associated with symptoms of respiratory allergies. Indoors the total culturable fungal count was 1548 CFU/m³; outdoors, it was 1452 CFU/m³. Indoor values of culturable fungal count, total spores count and ergosterol content ranged from 52 to 124 CFU/m³, 100 to 400 spore/m³ and 5 to 27.7 mg/m³, respectively, whereas outdoor levels typically varied between 25 and 222 CFU/m³, 110 and 900 spore/m³ and 3.3 and 67.2 mg/m³, respectively. The maxima for these parameters were detected indoors in house no. 6 and outdoors, outside of house no. 7. The most abundant species were primarily mitosporic (2832 CFU/m³). The most frequent species in both the indoor and outdoor samples were Cladosporium cladosporioides followed by Alternaria alternata and Penicillium chrysogenum,with inside:outside ratios of 1.4, 1.8 and 1.9, respectively. The patterns of fungal abundance were influenced to some extent by changes in the relative humidity and temperature. Other factors, such as type of culture media, rate of sedimentation, size, survival rates of spore and species competition,also affected fungal counts and should be taken into consideration during any analysis of bioaerosol data.     

Airborne dust,bacteria, actinomycetes and fungi at a flourmill

A study was carried out on suspended dust, bacterial and fungal aerosols in a four-storey flourmill building located in Giza, Egypt. Airborne microorganisms were quantitatively isolated using liquid impinger and gravimetric samplers during the period from March 2004 to February 2005. Suspended dust varied from 1.96 to 16.3 mg m⁻³ and 0.69 to 1.8 mg m⁻³ in the indoor and outdoor environments, respectively. Suspended dust was significantly greater (P < 0.05) at bran package, double roller, purifiers and flour storage units in comparison to the outdoor reference site. The dust levels exceed the occupational exposure limit (OEL) of 0.5 mg m⁻³ for flour dust. Airborne microbial counts were found at median values, between sampling locations, ranged from 0 to >10⁴ CFU m⁻³. Gram-negative bacteria were found in small numbers (0–10² CFU m⁻³). The highest concentration of actinomycetes (>10³ CFU m⁻³) was detected in the storage unit. Airborne fungal counts were found at the median values, between sampling locations, varied from 10³ to 10⁴ CFU m⁻³. The counts of airborne bacteria and fungi were significantly greater (P < 0.05) at the purifiers and double roller mill units in comparison to the outdoor reference site using the liquid impinger sampler. Microbial levels associated with bulk deposited dust averaged between 10⁵ and 10⁶ CFU g⁻¹. Alcaligenes (5.4%) Pseudomonas (3.87%) and Enterobacter (3.1%) were the predominant Gram-negative species while Bacillus (29.4%) and Micrococci (13.9%) were the major components of Gram-positive bacteria. Aspergillus and Penicillium were the predominant fungal types indoor whereas Cladosporium (35.2%) and Aspergillus species (22.2%) were the predominant fungal types outdoor. A number of allergenic and toxigenic bioaerosols were found in the flourmill workplace.     

Physiological Performance of Andropogon gerardii, Panicum virgatum, and Sorghastrum nutans on Reclaimed Mine Spoil

Physiological and vegetative performances of three prairie grasses were investigated to assess their adaptation to soil conditions at two strip mine sites and a nearby railroad prairie. Additionally, rhizomes of the species were transplanted to a pot experiment and grown in both field soil and greenhouse potting medium to investigate the extent to which plants are limited under field conditions. Field measurements of photosynthetic rate and stomatal conductance to water vapor were made on the three species monthly from May to late August. Gas exchange measurements on potted plants were made biweekly from early May to mid-July. In September, vegetative and flowering characteristics were measured on both field and potted plants. Field gas exchange rates were highest at one of the mines. Sorghastrum nutans had the highest rates at the mine sites, whereas Panicum virgatum had the highest rates at the prairie site. Potted plants from the prairie site usually exhibited the highest gas exchange rates, and Sorghastrum nutans had higher rates than Panicum virgatum and Andropogon gerardii. Potted plants in field soil generally had higher gas-exchange rates than plants growing in greenhouse potting medium, and potted plants had higher gas-exchange rates than field-grown plants. Vegetative and reproductive performance of field plants was highest at one of the mine sites. Potted plants in greenhouse medium had up to twice the vegetative and reproductive output as potted plants in field soil or plants growing in the field. The physiological and vegetative performance of these species indicates that they are well adapted to the soil conditions at these strip mine sites, and that they are a viable alternative to nonnative plantings for restoration.     

Aeromycological study in the Cathedral of Santiago de Compostela (Spain)

A study of airborne fungi was carried out in the architectural complex of the Cathedral of Santiago de Compostela (Spain) during 2002, by using viable volumetric sampling methods. This resulted in a total of 35 identified taxa, of which the most abundant were: Alternaria, Aspergillus, Cladosporium and Penicillium. Sampling was completed with data from the outdoor atmosphere and swab samples in specific places.In general there were no statistically significant indoor/outdoor differences and in both cases the highest CFU m-3 were obtained during the spring-summer. Similar relatively low numbers of the same fungi were likewise detected at different points in the Cathedral nave, while up to nearly 6500 CFU m-3 were recorded in the Corticela Chapel. The study of intradiurnal levels carried out in the Cathedral nave reveals greater abundance of fungal concentrations at 13:00 h, the moment of massive influx of visitors in the Cathedral, with 406 CFU m-3 compared to the 380 CFU m-3 sampled at 9:00 h and the 350 CFU m-3 at 21:00 h. The whole investigation is the first study of the atmospheric fungal content of the Cathedral of Santiago de Compostela.     

A Case of Scedosporium aurantiacum Infection in the United States

Mycopathologia - Scedosporium aurantiacum is one of the emergent opportunistic fungal pathogens among immunocompromised hosts. Colonization of S. aurantiacum can also occur in patients with...     

Opportunistic Pathogens and Elements of the Resistome that Are Common in Bottled Mineral Water Support the Need for Continuous Surveillance

Several differences concerning bacterial species, opportunistic pathogens, elements of the resistome as well as variations concerning the CFU/mL counts were identified in some of the five most marketed bottled mineral water from Araraquara city, São Paulo, Brazil. Two out of five brands tested were confirmed as potential source of opportunistic pathogens, including Mycobacterium gordonae, Ralstonia picketti and Burkholderia cepacia complex (Bcc). A total of one hundred and six isolates were recovered from four of these bottled mineral water brands. Betaproteobacteria was predominant followed by Alphaproteobacteria, Gammaproteobacteria and Firmicutes. Ninety percent of the bacteria isolated demonstrated resistance to seventeen of the nineteen antimicrobials tested. These antimicrobials included eight different classes, including 3rd and 4th generation cephalosporins, carbapenems and fluoroquinolones. Multidrug resistant bacteria were detected for fifty-nine percent of isolates in three water brands at counts up to 10³ CFU/ml. Of major concern, the two bottled mineral water harboring opportunistic pathogens were also source of elements of the resistome that could be directly transferred to humans. All these differences found among brands highlight the need for continuous bacteriological surveillance of bottled mineral water.     

Selection of antagonistic soil microbes against a few fungal pathogens of piper betle L

Summary Against the fungal pathogens,Phytophthora parasitica, Sclerotium rolfsii, Colletotrichum capsici andGlomerella cingulata responsible for leaf and foot rot of betel vines, 3 fungus, 9 actinomycetes and 4 bacterial antagonists were screened out from 61 fungus, 28 actinomycetes and 4 bacterial organisms isolated from 3 sources of soils. One each from the 3 groups of antagonists when further tested, was found quite effective against the pathogens towards neutral side of H-ion concentration. The antagonists (P. citrinum, Streptomyces sp. and bacterial organism B-7) were also found effective against 18 among 32 isolated fungus organisms from potted soil (collected from betel vine soil) and except one which happened to beP. citrinum, the rest had no adverse effect upon their growth.This work is a part of a scheme supported by Food and Agriculture Council of Pakistan and conducted in Jute Research Institute.     

Induction of resistance in Phaseolus vulgaris L. cv. Lima against some soil-borne fungal pathogens by pre-inoculation with tobacco necrosis virus (TNV) reacting hypersensitivity

Abstract

Tobacco necrosis virus (TNV) was tested to induce systemic acquired resistance (SAR) in Phaseolus vulgaris cv. Lima against three important soil-borne fungal pathogens viz: Rhizoctonia solani, Macrophomina phaseolina and Fusarium oxysporum. Application of TNV as a local infection of seven-day old primary leaves of Phaseolus vulgaris cv. Lima resulted in reduction of the mean disease rating of root-rot and damping-off caused by the tested fungal pathogens. The pre-inoculated plants with TNV showed a significant enhancement in their content of photosynthetic pigments (chlorophyll a, b and carotenoids) compared to those inoculated with fungal pathogens only. The percentage of cell membrane stability and ion leakage of viral-treated plants were significantly increased confirming the healthy cytological status of the treated plants. Results demonstrated that inoculation of the primary leaves of beans with TNV before infection with the fungal pathogens leads to changes in protein patterns and showed differences compared with control and caused the appearance of at least one new protein band compared with only fungal-infected plants. Also, an increase in peroxidase activity emerged in the thickness of the isozymic pattern in addition to the synthesis of new bands which was observed as a result of TNV application before infection with the three fungal pathogens. Induction of the synthesis of a new protein and increasing peroxidase activity in the inoculated plants enhanced the defense system against the target pathogen. The results greatly supported the successful application of TNV in the induction of systemic acquired resistance in P. vulgaris cv. Lima against the fungal pathogens.     

Indoor and outdoor atmospheric fungal spores in the São Paulo metropolitan area (Brazil): species and numeric concentrations

The aim of this study was to estimate the indoor and outdoor concentrations of fungal spores in the Metropolitan Area of Sao Paulo (MASP), collected at different sites in winter/spring and summer seasons. The techniques adopted included cultivation (samples collected with impactors) and microscopic enumeration (samples collected with impingers). The overall results showed total concentrations of fungal spores as high as 36,000 per cubic meter, with a large proportion of non culturable spores (around 91% of the total). Penicillium sp. and Aspergillus sp. were the dominant species both indoors and outdoors, in all seasons tested, occurring in more than 30% of homes at very high concentrations of culturable airborne fungi [colony forming units(CFU) m⁻³]. There was no significant difference between indoor and outdoor concentrations. The total fungal spore concentration found in winter was 19% higher than that in summer. Heat and humidity were the main factors affecting fungal growth; however, a non-linear response to these factors was found. Thus, temperatures below 16°C and above 25°C caused a reduction in the concentration (CFU m⁻³) of airborne fungi, which fits with MASP climatalogy. The same pattern was observed for humidity, although not as clearly as with temperature given the usual high relative humidity (above 70%) in the study area. These results are relevant for public health interventions that aim to reduce respiratory morbidity among susceptible populations.     

Direct effect of biocontrol agents on wilt and root-rot diseases of sesame

In Egypt, sesame cultivation is subject to attack by wilt and root-rot diseases caused by Fusarium oxysporum f.sp. sesami (Zap) Cast. and Macrophomina phaseolina (Maubl) Ashby causing losses in quality and quantity of sesame seed yield. Bacillus subtilis and Trichoderma viride isolates which were isolated from sesame rhizosphere were the most effective to antagonise fungal pathogens, causing high reduction of hyphal fungal growth. Trichoderma viride was found to be mycoparasitic on Fusarium oxysporum f.sp. sesami and M. phaseolina causing morphological atternation of fungal cells and sclerotial formation. In general, Bacillus subtilis, T. viride, avirulent Fusarium oxysporum isolate and Glomus spp. (Amycorrhizae) significantly reduced wilt and root-rot incidence of sesame plants at artificially infested potted soil by each one or two pathogens. Data obtained indicate that Glomus spp significantly reduced wilt and disease severity development on sesame plants followed by T. viride. Meanwhile, avirulent Fusarium oxysporum isolate followed by Glomus spp. were effective against root-rot disease incidence caused by M. phaseolina. Glomus spp. followed by B. subtilis significantly reduced wilt and root-rot disease of sesame plants. All biotic agents significantly reduced F. oxysporum f.sp. sesami and M. phaseolina counts in sesame rhizosphere at the lowest level. Glomus spp. and the avirulent isolate of F. oxysporum eliminated M. phaseolina in sesame rhizosphere. Meanwhile T. viride was the best agent at reducing F. oxysporum at a lower level than other treatments. Application of VA mycorrhizae (Glomus spp.) in fields naturally infested by pathogens significantly reduced wilt and root-rot incidence and it significantly colonised sesame root systems and rhizospheres compared to untreated sesame transplantings.     

Phaeoacremonium spp. and Botryosphaeriaceae spp. Associated with Date Palm (Phoenix dactylifera L.) Decline in Iran

During spring and summer of 2011, a survey was undertaken on some palm groves in the Kerman province (south‐eastern Iran) to determine the fungal pathogens associated with date palm (Phoenix dactylifera L.) decline diseases. Samples were taken from date palm trees showing yellowing, wilting and dieback symptoms. Isolations were made from symptomatic tissues on malt extract agar (MEA) supplemented with 100 mg/l streptomycin sulphate (MEAS). Two species of Phaeoacremonium, Phaeoacremonium aleophilum and Pm. parasiticum, and two species of Botryosphaeriaceae, Botryosphaeria dothidea andDiplodia mutila, were isolated from affected trees and identified on the basis of morphological, cultural and molecular characteristics. Pathogenicity tests were performed on date palm (4‐year‐old potted plants) under greenhouse conditions. Based on the pathogenicity tests, Pm. aleophilum was the most virulent and caused the longest lesions. This is the first report of Pm. aleophilum and B. dothidea and their pathogenicity on date palm tree.     

Groups and Sources of Yeasts in House Dust

House dust contains bacteria, mycelial fungi, microarthropods, and yeasts. House dust samples collected in 25 apartments in Moscow and the Moscow region were found to contain yeasts belonging to the genera Candida, Cryptococcus, Debaryomyces, Rhodotorula, Sporobolomyces, and Trichosporon. The most frequently encountered microorganisms were typical epiphytic yeasts, such as Cryptococcus diffluens and Rhodotorula mucilaginosa, which are capable of long-term preservation in an inactive state. The direct source of epiphytic yeasts occurring in the house dust might be indoor plants, which were contaminated with these yeasts, albeit to a lesser degree than outdoor plants. Along with the typical epiphytic yeasts, the house dust contained the opportunistic yeast pathogens Candida catenulata, C. guillermondii, C. haemulonii, C. rugosa, and C. tropicalis, which are known as the causal agents of candidiases. We failed to reveal any correlation between the abundance of particular yeast species in the house dust, residential characteristics, and the atopic dermatitis of the inhabitants.     

Non-native Microstegium vimineum populations collapse with fungal leaf spot disease outbreak

Non-native plants may meet little resistance in the novel range if they leave their biological enemies at home. As a result, species invasion can be rapid and appear unlimited. However, with time, organisms may acquire novel enemies in the novel range, or home-range enemies also may colonize the novel range. For plants, several authors have suggested that enemy release may give way to enemy acquisition in which pathogens accumulate and suppresses non-native plants. The ‘naturalization’ that occurs with acquired enemies may take decades to develop, yet most species invasion research lasts less than 4 years, and data tracking plant invasion before and after the appearance of pathogens are rare. Microstegium vimineum is an Asian grass that has invaded deciduous forest habitats in the southern Midwestern and Southeastern USA and is currently expanding in the Northeastern USA. We recorded widespread expansions in M. populations in North Carolina and Georgia (USA) between 2009 and 2011 but noticed that a fungal pathogen (indicated by leaf lesions; Bipolaris sp.) appeared on several of the populations in 2011. In 2019, we re-sampled these populations to determine whether the appearance of the fungal pathogen corresponded with a suppression of M. vimineum expansion. We found the once-expanding M. vimineum populations in retreat in 2019, and the plant population contractions were greater (and seed production lesser) where the fungal leaf spot disease was most extensive. These results suggest that enemy acquisition suppressed an active non-native plant invasion. We also found that where M. vimineum populations declined (or disappeared) native plants appeared to fill in the gap. Hence, whereby exotic species may gain advantage in novel habitat with the loss of their native-range pathogens, with longer time spans, enemy release may give way to enemy acquisition and native populations may recover if they are immune to the pathogens.

     

Interactions between functionally diverse fungal mutualists inconsistently affect plant performance and competition

Plants form mutualistic relationship with a variety of belowground fungal species. Such a mutualistic relationship can enhance plant growth and resistance to pathogens. Yet, we know little about how interactions between functionally diverse groups of fungal mutualists affect plant performance and competition. We experimentally determined the effects of interaction between two functional groups of belowground fungi that form mutualistic relationship with plants, arbuscular mycorrhizal (AM) fungi and Trichoderma, on interspecific competition between pairs of closely related plant species from four different genera. We hypothesized that the combination of two functionally diverse belowground fungal species would allow plants and fungi to partition their symbiotic relationships and relax plant–plant competition. Our results show that: 1) the AM fungal species consistently outcompeted the Trichoderma species independent of plant combinations; 2) the fungal species generally had limited effects on competitive interactions between plants; 3) however, the combination of fungal species relaxed interspecific competition in one of the four instances of plant–plant competition, despite the general competitive superiority of AM fungi over Trichoderma. We highlight that the competitive outcome between functionally diverse fungal species may show high consistency across a broad range of host plants and their combinations. However, despite this consistent competitive hierarchy, the consequences of their interaction for plant performance and competition can strongly vary among plant communities.