肿瘤染色体畸变分析方法新进展

摘要: 肿瘤的发生多与染色体畸变有关, 确定染色体畸变与肿瘤的关系, 必然离不开染色体畸变的检测分析。文章简要综述几种常用染色体畸变的检测方法及其新进展, 包括G显带、荧光原位杂交(FISH )、光谱核型分析(SKY)、多色荧光原位杂交(M-FISH)、多色显带分析技术(Rx-FISH)、比较基因组杂交(CGH)和微阵列比较基因组杂交(Array CGH), 以及这些方法在肿瘤诊断和研究方面的应用。     

玉米粗线期染色体的高分辨率染色粒图

经温和固定和展片的玉米小孢子母细胞减数分裂的粗线期染色体,在电镜下,着丝粒和大量的电子致密的染色粒清晰可辨。其数量和位置自减数分裂早偶线期至早双线期是稳定和可重复的。为此,我们对粗线期的10条双价体中各条分别进行详细的染色粒分析,构建了一个完整的染色体组的染色粒图。总共识别和定位了达430±12(根据7套染色体组计数平均)染色粒。染色粒图可用于确定原位杂交法定位基因的详细分布区域,染色体重排中断点的定位,识别外源单价体和由于不联会或脱联会而产生的单价体等。     

蒜有丝分裂前期和前中期染色体的螺旋结构

本文研究了蒜(Allium sativum)根端细胞有丝分裂前期和前中期染色体的螺旋结构及其形成过程。在光镜和电镜下都看到前期核内存在螺旋化的染色线。从早前期到晚前期染色线的螺旋化是逐渐进行的。开始只有部分染色线螺旋化,螺幅直径约为1.2-1.5微米,以后螺幅增大,达1.8～2微米,并且螺旋结构变得更为紧密。前中期染色体中可见由直径600 nm左右的染色线形成的螺旋结构,螺旋比晚前期更加紧密。本文对中期染色体的高层次结构进行了讨论。     

薏苡45S和5S rDNA的染色体定位研究(简报)

通过荧光原位杂交的方法确定了45S和5S正NA序列在薏苡前中期染色体上的位置.尽管具有20条染色体的薏苡是四倍体植物,但它的基因组中只有一个45S和5S rDNA位点.根据薏苡前中期染色体的核型,确定45S rDNA序列位于薏苡第2号染色体短臂上的次级缢痕区和随体上,5S rDNA序列位于第7号染色体长臂靠近着丝粒处,5S rDNA位点到着丝粒的百分距离是29.13±1.76.     

炭疽芽胞杆菌染色体特异序列的筛选及实时定量检测

筛选117条炭疽芽胞杆菌(Bacillusanthracis)特异序列,经双重特异性验证后得到19条理想的特异序列(genomicsignatures),其中6条符合设计TaqMan探针建立实时定量PCR的要求,根据常规PCR检测结果选择其中C04片段与炭疽芽胞杆菌毒性质粒pX01、pX02上的pagA、capB基因建立实时定量PCR检测体系。经试验证实这一体系检测灵敏度达到每PCR反应10~100个拷贝。利用12种相关菌株评价后获得100%特异性,对10份模拟污染标本和20份对照标本检测,所有污染标本均被检出,所有对照标本均为阴性。此方法特异、灵敏、高效,在炭疽芽胞杆菌感染的诊断和环境污染的检测等领域有潜在的应用前景。     

脂肪细胞分化差异表达基因与其染色体所在遗传图位置的相关性分析

在脂肪细胞分化过程中,有约1／3表达的基因被诱导或抑制。通过分析3T3－L1脂肪细胞分化差异表达基因在染色体遗传图上的位置,对共同表达诱导或抑制的基因群体的调控与它们在染色体遗传图上的位置分布的关系进行分析。结果显示这些共同调控的基因除拥有共同的转录调控因子外,未发现在染色体的位置上和它们的共同调控有相关性。     

植物减数分裂染色体配对与染色体组分析的研究进展

简要介绍了植物减数分裂染色体配对研究。综述了减数分裂染色体配对研究在鉴定异源易位系、确定多倍体物种类型、分析物种间亲缘关系和物种的染色体组来源及探讨杂种不育的细胞遗传学机制等诸多方面的应用进展。分析了影响染色体配对的主要因素, 如配对控制体系、遗传背景和外界环境条件等,并展望了染色体配对研究与其他技术结合在染色体组分析中的应用前景。     

植物减数分裂染色体配对与染色体组分析的研究进展

简要介绍了植物减数分裂染色体配对研究.综述了减数分裂染色体配对研究在鉴定异源易位系、确定多倍体物种类型、分析物种间亲缘关系和物种的染色体组来源及探讨杂种不育的细胞遗传学机制等诸多方面的应用进展.分析了影响染色体配对的主要因素,如配对控制体系、遗传背景和外界环境条件等,并展望了染色体配对研究与其他技术结合在染色体组分析中的应用前景.     

玉米mir1基因在玉米和薏苡中的比较物理定位

玉米基因mir1编码一种抗秋季黏虫的半胱氨酸蛋白酶。利用RFLP作图mir1基因被定位在玉米第 6号染色体短臂上 ,但它在第 6号染色体短臂上的物理位置还不知道。实验以mir1和 4 5SrDNA为探针 ,通过双色荧光原位杂交技术确定了mir1基因在玉米细胞分裂中期和粗线期第 6号染色体上的物理位置。Southern杂交结果表明 ,在薏苡基因组中存在mir1基因的同源序列 ,进一步利用荧光原位杂交的方法确定mir1基因的同源序列定位于薏苡第 7号染色体长臂的近末端 ,其信号与着丝粒的百分距离为 73 33± 0 15。     

东方蓼的染色体核型分析

目的:对药用植物东方蓼的染色体数目、核型、体积等进行了研究。方法:采用常规制片方法,结合显微摄影对染色体的数目进行统计分析。结果:东方蓼体细胞染色体数目2n=22,相对长度组成2n=22=10M2+12M1;核型公式为K(2n)=2X=22=20m+2M;全体染色体总长19.16μm,长臂总长10.93μm,核型不对称系数(AS.K%)为57.00%,属于"1A"型,全体染色体总体积为20.30μm3。结论:东方蓼体细胞染色体的数目、核型、体积等清晰准确。     

薏苡种子形态性状多样性评价

薏苡是优质的药食兼用作物。本研究对我国36份薏苡种质的种子形态性状进行了主成分分析和聚类分析。结果表明,36份薏苡种质具有较高的形态性状多样性。不同薏苡种质的4个种子质量性状间存在差异。单因素方差分析显示11个种子数量性状在不同薏苡种质间呈极显著差异。数量性状的变异系数在8.43%~68.01%之间,种壳与外种皮重量的变异系数最大而种仁长度的变异系数最小。主成分分析将36份薏苡种质分为中部及南部栽培种质、北部栽培种质和野生种质3大类,3类种质的形态特征存在明显差异。聚类分析将36份薏苡种质分为5大类群,即中部及南部栽培种质、北部栽培种质和3个类群野生种质。初步筛选出6份可能具有较高抗肿瘤活性的薏苡种质FJNJ、TJ-BK-1、TJ-BK-2、MY-BK-1、MY-BK-2和JYSD。     

A Fine Physical Map of Arabidopsis thaliana Chromosome 5: Construction of a Sequence-ready Contig Map

A fine physical map of Arabidopsis thaliana chromosome 5 wasconstructed by ordering the clones from YAC, P1, TAC and BAClibraries of the genome using the sequences of a variety ofgenetic and EST markers and terminal sequences of clones. Themarkers used were 88 genetic markers, 13 EST markers, 87 YACend probes, 100 YAC subclone end probes, and 390 end probesof P1, TAC and BAC clones. The entire genome of chromosome 5,except for the centromeric and telomeric regions, was coveredby two large contigs 11.6 Mb and 14.2 Mb long separated by thecentromeric region. The minimum tiling path of the chromosomewas constituted by a total of 430 P1, TAC and BAC clones. Themap information is available at the Web site http://www.kazusa.or.jp/arabi/.     

Quantitative chromosome map of the polyploid Saccharum spontaneum by multicolor fluorescence in situ hybridization and imaging methods

Somatic chromosomes of a wild relative of sugarcane (Saccharum spontaneum L.) anther culture-derived clone (AP 85-361, 2n=32) were identified and characterized by computer-aided imaging technology and molecular cytological methods. The presence of four satellite chromosomes and four nearly identical chromosome sets suggests that the clone is a tetrahaploid with the basic number x=8. A quantitative chromosome map, or idiogram, was developed using image analysis of the condensation pattern (CP) at the prometaphase stage of somatic chromosomes. The 45S and 5S ribosomal RNA gene (rDNA) loci were simultaneously visualized by multi-color fluorescence in situ hybridization (McFISH) and precisely localized to the regions of 3p3.1 and 6q1.3 on the idiogram. The simultaneous visualization of two sets of four ribosomal RNA genes confirms tetraploidy of this clone. This conclusion is consistent with results of molecular marker mapping. The quantitative chromosome map produced will become the foundation for genome analyses based on chromosome identity and structure. Previously impossible identification of small chromosomes and untestable hypotheses about the polyploid nature of plants can now be settled with these two approaches of quantitative karyotyping and FISH.     

9号染色体10个STR基因座的遗传制图

运用小规模实验初步探讨了以中国人群为基础的遗传图绘制工作的必要性。18个无关汉族3代家系共131份血样采自甘肃省白银地区,常规PCR扩增9号染色体的10个STR基因座,采用非变性聚丙烯酰凝胶电泳分析。PCR产物经克隆测序确定核心序列重复次数,采用标准命名法命名各等位基因,用POPGENE软件包计算各基因座等位基因频率,并进行Hardy-Weiberg平衡检验,用Linkage软件包进行各基因座之间连锁关系分析。根据连锁分析结果绘制了中国人群由10个STR基因座构成的9号染色体遗传图。基于中国人群体的9号染色体10个STR连分析锁分析结果与GDB检索结果之间存在较显著的差异,这种差异同时表现在个别基因座之间和0号染色体遗传图总长度上。男、女遗传结果之间在较显著的差异,这种差异同时表现在个别基因之间和9号染色体总长度上。男、女遗传图总长度为129．21cM和178．4cM,均大高加索入。说明了在运用GDB数据之前,有必要根据实验群体进行基因座的初步评估,并且有必要对基于中国人群体的遗传图进行进一步的研究。     

基于CSSL的高密度物理图谱定位水稻分蘖角度QTL

对以籼稻9311为遗传背景携带粳稻日本晴基因组的染色体片段置换系（CSSL）的遗传图谱进行分子标记加密,构建了含250个多态标记的高密度物理图谱。以119个CSSLs为材料,P≤0.001为阈值,筛选到分蘖角度与受体亲本9311差异极显著的10个系。结合物理图谱和代换作图方法,共鉴定出5个分蘖角度QTL,其中qTA11的加性效应表现为增效作用,来源于9311的等位基因;其余4个QTL的加性效应为减效作用,均来源于日本晴的等位基因。qTA6-1和qTA6-2分别被定位于第6染色体RM253–RM527之间的3.55Mb区段和RM3139–RM494的1.65Mb区间;qTA9被定位于第9染色体RM257–RM189之间的3.40Mb区段;qTA10被定位在第10染色体RM222–S10-1之间的2.10Mb区段;qTA11被定位于第11染色体RM1761–RM4504之间的3.30Mb区间。以上研究结果为水稻分蘖角度QTL的精细定位和株型育种提供了依据。     

新疆猪毛菜属4种植物核型分析及进化研究

采用常规压片法,对钠猪毛菜、准噶尔猪毛菜、小药猪毛菜和薄翅猪毛菜等4种新疆猪毛菜属植物的染色体核型进行了分析,并对已报道的12种新疆猪毛菜属植物核型进行了比较.结果表明:(1)钠猪毛菜体细胞染色体数2n=2x=18=12m+6sm,准噶尔猪毛菜、小药猪毛菜体细胞染色体数为2n=2x=18=18m,该3种均属于1A型;薄翅猪毛菜体细胞染色体数为2n=2x=54=50m+2sm+2st,属2A型;(2)12种新疆猪毛菜属植物核型比较结果证明,猪毛菜属植物的染色体基数为9,钠猪毛菜、准噶尔猪毛菜和小药猪毛菜均为二倍体,薄翅猪毛菜为六倍体,钠猪毛菜和准噶尔猪毛菜具有随体.准噶尔猪毛菜、小药猪毛菜、薄翅猪毛菜属植物的核型均属于首次报道.     

Differential genome evolution and speciation of Coix lacryma-jobi L. and Coix aquatica Roxb. hybrid guangxi revealed by repetitive sequence analysis and fine karyotyping

Abstract

Background

Coix, Sorghum and Zea are closely related plant genera in the subtribe Maydeae. Coix comprises 9–11 species with different ploidy levels (2n = 10, 20, 30, and 40). The exclusively cultivated C. lacryma-jobi L. (2n = 20) is widely used in East and Southeast Asia for food and medicinal applications. Three fertile cytotypes (2n = 10, 20, and 40) have been reported for C. aquatica Roxb. One sterile cytotype (2n = 30) closely related to C. aquatica has been recently found in Guangxi of China. This putative hybrid has been named C. aquatica HG (Hybrid Guangxi). The genome composition and the evolutionary history of C. lacryma-jobi and C. aquatica HG are largely unclear.

Results

About 76% of the genome of C. lacryma-jobi and 73% of the genome of C. aquatica HG are repetitive DNA sequences as shown by low coverage genome sequencing followed by similarity-based cluster analysis. In addition, long terminal repeat (LTR) retrotransposable elements are dominant repetitive sequences in these two genomes, and the proportions of many repetitive sequences in whole genome varied greatly between the two species, indicating evolutionary divergence of them. We also found that a novel 102 bp variant of centromeric satellite repeat CentX and two other satellites only appeared in C. aquatica HG. The results from FISH analysis with repeat probe cocktails and the data from chromosomes pairing in meiosis metaphase showed that C. lacryma-jobi is likely a diploidized paleotetraploid species and C. aquatica HG is possibly a recently formed hybrid. Furthermore, C. lacryma-jobi and C. aquatica HG shared more co-existing repeat families and higher sequence similarity with Sorghum than with Zea.

Conclusions

The composition and abundance of repetitive sequences are divergent between the genomes of C. lacryma-jobi and C. aquatica HG. The results from fine karyotyping analysis and chromosome pairing suggested diploidization of C. lacryma-jobi during evolution and C. aquatica HG is a recently formed hybrid. The genome-wide comparison of repetitive sequences indicated that the repeats in Coix were more similar to those in Sorghum than to those in Zea, which is consistent with the phylogenetic relationship reported by previous work.

Electronic supplementary material

The online version of this article (doi:10.1186/1471-2164-15-1025) contains supplementary material, which is available to authorized users.