Energy storage during reproductive diapause in the Drosophila melanogaster species group

Summary Temperate species of the Drosophila melanogaster group enter reproductive diapause for overwintering in response to short daylength. During the prediapause period they accumulate triacylglycerols, but not glycogen, as energy resources. The capacity for storing triacylglycerols differs between species, and appears to be closely correlated with diapause and cold-hardiness; cool-temperate species, such as those of the auraria species complex, which enter a deep diapause and are highly cold-hardy, accumulate larger quantities of triacylglycerols than warm-temperate species, such as D. rufa and D. lutescens, which enter a weak diapause and are less cold-hardy. Among the cool-temperate spcies, D. subauraria occurs at a higher latitude and has the greatest capacity for accumulating triacylglycerols. A subtropical species, D. takahashii, which has no diapause in nature and is not cold-hardy, is unable to store the same quantities of triacylglycerols as temperate species.     

Phylogenomic species delimitation and host‐symbiont coevolution in the fungus‐farming ant genus Sericomyrmex Mayr (Hymenoptera: Formicidae): ultraconserved elements (UCEs) resolve a recent radiation

Ants in the Neotropical genus Sericomyrmex Mayr cultivate fungi for food. Both ants and fungi are obligate, coevolved symbionts. The taxonomy of Sericomyrmex is problematic because the morphology of the worker caste is generally homogeneous across all of the species within the genus, species limits are vague, and the relationships between them are unknown. We used ultraconserved elements (UCEs) as genome‐scale markers to reconstruct evolutionary history and to infer species boundaries in Sericomyrmex. We recovered an average of ～990 UCE loci for 88 Sericomyrmex samples from across the geographical range of the genus as well as for five outgroup taxa. Using maximum likelihood and species‐tree approaches, we recovered nearly identical topologies across datasets with 50–95% matrix completeness. We identify nine species‐level lineages in Sericomyrmex, including two new species. This is less than the previously described 19 species, even accounting for two species for which we had no UCE samples, which brings the total number of Sericomyrmex species to 11. Divergence‐dating analyses recovered 4.3 Ma as the crown‐group age estimates for Sericomyrmex, indicating a recent, rapid radiation. We also sequenced mitochondrial cytochrome oxidase subunit I (COI) for 125 specimens. Resolution and support for clades in our COI phylogeny are weak, indicating that COI is not an appropriate species‐delimitation tool. However, taxa within species consistently cluster together, suggesting that COI is useful as a species identification (‘DNA barcoding’) tool. We also sequenced internal transcribed spacer (ITS) and large subunit (LSU) for 32 Sericomyrmex fungal cultivars. The fungal phylogeny confirms that Sericomyrmex fungi are generalized higher‐attine cultivars, interspersed with Trachymyrmex‐associated fungal species, indicating cultivar sharing and horizontal transfer between these two genera. Our results indicate that UCEs offer immense potential for delimiting and resolving relationships of problematic, recently diverged species.     

披碱草属及其近源属植物种子胚乳细胞多样性研究

披碱草属不仅是小麦、大麦等作物的重要基因库,也是优良牧草的重要组成部分。胚乳是麦类作物种子的重要组成部分,其重量占籽粒重量在90%以上。胚乳特性是一个相对稳定的遗传性状,可以将胚乳特性作为植物分类和系统关系的一个指标。胚乳细胞特征作为植物的一类微形态特征,在麦类植物系统分类与进化研究中具有一定的价值。该研究对小麦族的6个披碱草属(Elymus)物种、2个拟鹅观草属(Pseudoroegneria)物种、1个大麦属(Hordeum)物种和2个冰草属(Agropyron)物种,共4属11份材料的胚乳细胞特征进行解剖观察并测量相关指标。结果表明:(1)不同属、种的植物种子胚乳细胞之间存在丰富的多样性,属间差异大于属内种间差异;(2)同样具有P染色体组的Agropyron cristatum和A.mongolicum与同样具有St染色体组的Pseudoroegneria libanotica和P.spicata各自在细胞形状和大小上的差异很小;(3)不同物种的胚乳细胞在大小、形状和数量上均表现出差异,但不能很好地反映属以及基因组间的差异,研究结果为揭示披碱草属植物的系统关系提供了胚乳细胞方面的证据,同时也为利用该属植物改良麦类作物品质积累资料。     

Neotypification of the genusTrichosporon

The currently accepted type species of the genusTrichosporon Behrend isT. beigelii. This species has formerly been regarded as identical toT. cutaneum. However, these fungi are now known to represent separate species with different ecology. The first species described inTrichosporon wasT. ovoides, an agent of human white piedra. A neotype strain is designated for this species, while a lectotype strain is indicated forT. cutaneum. The nameT. beigelii is considered as doubtful and consequently cannot be maintained.     

Revision of the genus Trogulus Latreille: the morphologically divergent Trogulus torosus species‐group of the Balkan Peninsula (Opiliones: Dyspnoi: Trogulidae)

Within the species‐rich European harvestman genus Trogulus Latreille, 1802, the Balkan Trogulus torosus species‐group as defined by Schönhofer and Martens is revised. The group is remarkable because it includes the world's largest Opiliones species, Trogulus torosus Simon, 1885, and Trogulus ozimeci sp. nov. is the first member of the family showing obvious adaption to subterranean life. According to nuclear 28S and mitochondrial cytochrome b gene data, the T. torosus species‐group and the Trogulus hirtus species‐group form a monophyletic unit. Only the former is treated here as a paraphyletic group. Despite this paraphyly, the T. torosus species‐group members share a number of morphological, morphometric, geographical, and ecological traits and are treated here as a unit for revisional work. Morphometric data are shown to be not only useful for species discrimination but also for species‐group delineation. Within the T. torosus species‐group six species are recognized: Trogulus banaticus Avram, 1971, Trogulus setosissimus Roewer, 1940, and T. torosus are re‐described; Trogulus megaligrava sp. nov. , T. ozimeci sp. nov. , and Trogulus tenuitarsus sp. nov. are described as new. Unusually within Trogulus, strong affiliations with subterranean habitats exist and are discussed. © 2013 The Linnean Society of London     

Birds adopting weaver nests for breeding in Africa

Weavers build domed, long-lasting nests that may also be adopted by other species for breeding, probably reducing the energetic costs of nest building to varying degrees. In an extensive literature search, 57 species were found to have at least one record of adopting a weaver nest. There is one known obligate nest user, the Pygmy Falcon Polihierax semitorquatus. Four species were classed as near obligate nest adopters. Four species were listed as common, 10 as occasional, and 38 species as rare nest adopters. Other than the falcon and lovebirds Agapornis species, these nest adopters are passerines. Of the 57 species of nest adopters, 35 species had confirmed eggs and/or chicks found in the weaver nests. Most nest adopter species were in the Estrildidae family (20 species), with three estrildids classed as near obligates. This was followed by the Muscicapidae family, species that build cup nests. By building their cup nests inside weaver nests, there is likely protection from adverse weather and predators. Overall, there appeared to be a large diversity of nest adopter species for the traditional savanna living weavers (Ploceus, Bubalornis, Anaplectes, Plocepasser and Philetairus).     

New World biogeography and the evolution of polychromatism: evidence from the bee assassin genus Apiomerus (Heteroptera: Reduviidae: Harpactorinae)

The crassipes and pictipes species groups of Apiomerus Hahn together contain 12 species, many with high intraspecific chromatic variability, which represent the majority of Nearctic species in this New World assassin bug genus. Because of their geographical distribution and their varying degrees of polychromatism, these two species groups provide a unique opportunity to study the evolution of polychromatism and analyse relationships among areas of endemism in the Nearctic, as well as determine the boundary between the Nearctic and Neotropical regions. The results of a morphology based phylogenetic analysis allowed investigation of these questions while also determining relationships among the 12 species in the two species groups. The crassipes and pictipes species groups were each supported as monophyletic and as sister taxa. Apiomerus rufipennis (Fallou) was not included in the original concept of the crassipes species group, but is shown here to be a member of the group. Apiomerus barrocoloradoi Forero, Berniker & Szerlip, which had been hypothesized previously to belong to the pictipes species group, is excluded from this group. Intraspecific polychromatism for each species was identified as being present in one of three states: no polychromatism; limited polychromatism; or polychromatism as discrete colour morphs. Limited polychromatism was here found to be the ancestral state for Apiomerus, and species with discrete colour morphs are restricted to the crassipes and pictipes species groups. Polychromatism appears to be a greatly homoplastic character within the genus. A Brooks parsimony analysis recovered distinct Nearctic and Neotropical clades. The Nearctic clade is divided between areas in the central and eastern U.S.A. and areas in the Western U.S.A. and Mexico. The Nearctic–Neotropical boundary for the taxa included in the analysis is along the Isthmus of Tehuantepec in southern Mexico.     

Evaluating costs for the <Emphasis Type="Italic">in vitro</Emphasis> propagation and preservation of endangered plants

In vitro methods provide opportunities for propagating and preserving endangered plant species when seed-based methods are not adequate. Such species include those that produce few or no seeds, as well as species with recalcitrant seeds. Tissue culture propagation methods can be used to produce such plants for reintroduction, research, education, display, and commerce. They can also be the basis for tissue banking as a way to preserve genetic diversity when seeds cannot be banked. With some recalcitrant species, embryo banking, a method which also utilizes in vitro culture for recovery germination, is possible. The number of endangered species that will require in vitro methods is estimated to be at least 5,000 worldwide. Further information is needed to identify these species, and the ongoing collection of information into databases on endangered species and recalcitrant species will help provide this. The costs of these methods are higher than for traditional propagation and preservation, but they may be necessary for species under higher threat. The multiplication rate of a culture, as well as the rates of rooting and acclimatization, has a major effect on the number of transfers needed for producing plants or tissue for banking, and improvements that will increase the efficiency of these steps can help lower costs. Further research into factors affecting the growth of tissues in vitro, as well as coordination of efforts among institutions with infrastructure for in vitro work, should facilitate the application of in vitro methods to the endangered species that cannot be propagated or preserved using seeds.     

An update on the status of native and exotic freshwater fishes of Italy

An updated, corrected checklist of both native and established alien freshwater fish species in Italy is given based on molecular, morphological and biogeographical data. Some 12 native species, reported as conspecific with transalpine species in official Italian ichthylogical literature, are in fact endemics. Previous taxonomic confusion has resulted in the introduction of several alien species, either with official stockings or mixed in as impurities. Rehabilitated species include the cyprinids Scardinius hesperidicus, Scardinius scardafa and Telestes savigny from northern Italy, as well as Squalius ruffoi and the Telestes comes from southern Italy. Squalius albus is a junior synonym of S. squalus. The endemic gudgeon, previously assigned to the genus Romanogobio, is returned to the genus Gobio (G. benacensis). Phoxinus lumaireul is a junior synonym of P. phoxinus. Among the Salmonidae, Salmo cenerinus is a junior synonym of S. marmoratus, while Salmo farioides represents the trout species of the Adriatic lineage for which a neotype is designated. Thymallus aeliani represents the endemic lineage of grayling of the Adriatic populations. The esocid Esox cisalpinus is an endemic pike species and Esox flaviae is a junior synonym; the extensive exportation as well as the presence of this species throughout Europe is possibly due to humans. Among sculpins, Cottus scaturigo and C. ferrugineus are junior synonyms of C. gobio. The International Union for Conservation of Nature (IUCN) categories for native species of Italy are updated. At present, 52 native freshwater fish species are listed: 2 are extinct (Acipenser sturio and Huso huso), 12 are critically endangered, 7 endangered, 10 vulnerable, 3 near‐threatened, 15 low concern and 3 data‐deficient; 35 species are the result of human transfers. Among the 51 introduced species, 6 are recently established (Leuciscus leuciscus, Oreochromis niloticus, Poecilia reticulata, Xiphophorus helleri, Amatitlania nigrofasciatus, Hemichromis sp.), 37 are already established, 5 are probably established and 3 are non‐established Chinese carp, maintained in the wild by intensive stockings. The family most involved is the Cyprinidae, with 22 alien and 20 native species.     

Phylogenetic analysis of eleven species of Biomphalaria Preston, 1910 (Gastropoda: Planorbidae) based on comparisons of allozymes

Freshwater snails in the genus Biomphalaria transmit Schistosoma mansoni in Africa, South America and the Caribbean region. Although considerable attention has been given to the identification of species, little is known of evolutionary relationships among the species. A phylogenetic analysis of 25 populations representing 11 species was performed on 25 enzyme loci examined using starch gel electrophoresis. A phylogenetic analysis of the individual populations produced 60 trees of equal length. The 60 trees have a consistency index value of 75.9% and a retention index value of 76.5%. The phylogenetic analysis provided strong support for the monophyly of Biomphalaria with either 14 or 15 synapomorphies uniting all of the species included and separating them from the outgroup, two species of Helisoma. Four nominal species represented by multiple populations formed monophyletic groups. Populations of B. sudanica, B. choanomphala, and B. alexandrina were interspersed. Ten arrangements were obtained for the populations of these three species. A variety of ingroup taxa were used to root the trees, and all provided support for the use of Helisoma species as an outgroup. In all of the trees obtained, the African species together formed a monophyletic group. In none of the trees obtained did the neotropical species form a monophyletic group. A constrained analysis requiring the monophyly of the neotropical species as well as the African species resulted in 90 trees just two steps longer than the shortest trees. Analysis of the species from either hemisphere alone resulted in decreased resolution, as measured by an increase in the number of trees obtained. This finding suggests that further comparisons of species from the two hemispheres will be of considerable value. Finally, two species which are resistant to infection with S. mansoni were included among the eleven studied. Neither of these species formed the sister group to all of the other species included, indicating that susceptibility is the plesiomorphic state, and that resistance is derived. Similarly, in none of the trees obtained did the two resistant species fall out as sister taxa, indicating that resistance arose independently twice.     

Transposition of the piggyBac element in embryos of Drosophila melanogaster, Aedes aegypti and Trichoplusia ni.

The Lepidopteran transposable element piggyBac is being recognized as a useful vector for genetic engineering in a variety of insect species. This transposon can mediate transformation in the Dipteran species Ceratitis capitata, and can potentially serve as a versatile vector for transformation of a wide variety of insect species. Using a plasmid-based interplasmid transposition assay, we have demonstrated that this transposon, of the short inverted terminal repeat type, is capable of transposition in embryos of three different insect species, Drosophila melanogaster, the yellow fever mosquito Aedes aegypti, and its host of origin, Trichoplusia ni. This assay can confirm the potential utility of piggyBac as a gene transfer tool in a given insect species, and provides an experimental model for assessing molecular mechanisms of transposon movement. Received: 19 November 1998 / Accepted: 1 March 1999     

Conocephalum salebrosum Szweykowski,Buczkowska & Odrzykoski (Marchantiopsida): modelling the occurrence of a hygrophytic species new to the bryoflora of Portugal,Madeira and Azores

Abstract

Conocephalum salebrosum Szweykowski, Buczkowska & Odrzykoski, a hygrophytic species, is newly reported for several localities in continental Portugal as well as in Madeira and Azores Islands. Information from studied specimens, and a map showing the actual distribution of this species and its closely related species, C. conicum (L.) Dumort., are provided as the basis for a discussion on the chorology and ecological ranges of both species. Additionally, a model of the potential distribution for both species in continental territory is developed through the Maximum Entropy Modelling technique, followed by an explanation of an hypothesis on the preferences of each species of Conocephalum known in this territory.     

Niche characteristics of Danish woody species as derived from coenoclines

Abstract. A main floristic coenocline is extracted from a Danish forest vegetation data set with Detrended Correspondence Analysis. Huisman‐Olff‐Fresco (HOF) modelling of 262 species occurrences relative to site scores along the coenocline is compared with Gaussian and Generalized Linear Modelling. HOF models allow for responses of variously skewed forms, which may result from interspecific interactions. Most species have symmetric (60%) or skewed (29%), and only few species have flat or monotone response curves. This provides evidence for the generality of unimodal plant species response curves, provided the gradient in question comprises a sufficient amount of compositional turnover. The Gaussian niche width is correlated with density of optima and probability of occurrence of the species. Detailed analysis of HOF estimates for 28 woody species indicates that early succession species such as Pinus sylvestris and Populus tremula have wider niches than middle to late successional canopy species such as Alnus glutinosa, Carpinus betulus, Fagus sylvatica, Fraxinus excelsior, Quercus robur and Tilia cordata. A marked overlap in niche range along the coenocline is interpreted in terms of species competition. Rubus idaeus intrudes into the niches of all other shrub species. Several canopy tree species, such as Fagus sylvatica, Fraxinus excelsior and Quercus robur overlap more than 60% of the ranges of all other species, while their internal overlaps are fairly equal, presenting evidence for their likely co‐existence given more natural forest conditions. The combined analysis of coenoclines with HOF modelling of species behaviour is the most robust among the compared methods for estimating model parameters and niche characteristics of plant species. It is recommended for future ecological studies.     

<Emphasis Type="Italic">Sphaerophragmium pulchrum</Emphasis>, a new species of rust fungi on <Emphasis Type="Italic">Albizia adinocephala</Emphasis> from Panama

Sphaerophragmium pulchrum is proposed as a new microcyclic rust species on Albizia adinocephala from Panama. Telia and spermogonia are described, illustrated, and compared to those of known species of Sphaerophragmium. Spermogonia are described for the first time for a species of Sphaerophragmium. This is the first record of this genus for the southern part of the Central American isthmus.     

DNA barcoding of Cymbidium by genome skimming: Call for next-generation nuclear barcodes

Cymbidium is an orchid genus that has undergone rapid radiation and has high ornamental, economic, ecological and cultural importance, but its classification based on morphology is controversial. The plastid genome (plastome), as an extension of plant standard DNA barcodes, has been widely used as a potential molecular marker for identifying recently diverged species or complicated plant groups. In this study, we newly generated 237 plastomes of 50 species (at least two individuals per species) by genome skimming, covering 71.4% of members of the genus Cymbidium. Sequence-based analyses (barcoding gaps and automatic barcode gap discovery) and tree-based analyses (maximum likelihood, Bayesian inference and multirate Poisson tree processes model) were conducted for species identification of Cymbidium. Our work provides a comprehensive DNA barcode reference library for Cymbidium species identification. The results show that compared with standard DNA barcodes (rbcL + matK) as well as the plastid trnH-psbA, the species identification rate of the plastome increased moderately from 58% to 68%. At the same time, we propose an optimized identification strategy for Cymbidium species. The plastome cannot completely resolve the species identification of Cymbidium, the main reasons being incomplete lineage sorting, artificial cultivation, natural hybridization and chloroplast capture. To further explore the potential use of nuclear data in identifying species, the Skmer method was adopted and the identification rate increased to 72%. It appears that nuclear genome data have a vital role in species identification and are expected to be used as next-generation nuclear barcodes.     

Phylogeny and species delimitation of North European Lumbricillus (Clitellata,Enchytraeidae)

The enchytraeid genus Lumbricillus comprises about 80 described species of clitellate worms, which are up to a few centimetres long, and they mostly inhabit the littoral zone of non‐tropical marine and brackish waters world‐wide. The phylogeny of this genus is poorly studied, but previous work has suggested that Lumbricillus is a non‐monophyletic group. In this study, species boundaries and the phylogeny of this genus is re‐assessed using more than 300 DNA‐barcoded specimens (using COI mtDNA), part of which was also sequenced for two additional mitochondrial and four nuclear molecular markers. Statistical and coalescent based applications were used for the delimitation of a total of 24 species, of which 20 were identified as belonging to 17 described morphospecies; one morphospecies was found to be a complex of four delimited species, and another four delimited species could not be matched with any described species. Furthermore, gene trees, concatenation and multispecies coalescent based species trees were estimated using Bayesian inference. The estimated phylogenies confirm a non‐monophyletic Lumbricillus as L. semifuscus is clearly excluded from the genus. Furthermore, the placement of a monophyletic clade consisting of L. arenarius, L. dubius, and an unidentified species varies between analyses; they are either found as the sister‐group to the genus Grania or as sister‐group to the remaining Lumbricillus, where the latter relationship is supported by the multispecies coalescent, which we consider as the most reliable method.     

Multilocus phylogeny and taxonomy of pikas of the subgenus Ochotona (Lagomorpha,Ochotonidae)

A complete set of pika taxa, belonging to the subgenus Ochotona, was studied using craniometric and multilocus genetic analyses. We examined 1,007 skulls, covering the entire distribution range of the subgenus, as well as the mitochondrial COI gene and three nuclear introns in 31 specimens, representing nearly all taxa in question. An additional set of 167 COI gene sequences and 357 cytb gene sequences was analysed to enlarge the geographical extent of genetic data and to compare the results with previous publications. We found that the subgenus consists of eight species. One of them, Ochotona morosa, is elevated to the full species rank for the first time. The name of this species is given preliminarily and should be studied additionally. Several cases of interspecies hybridisation were found, which indicates that mitochondrial DNA cannot be used for species identification in this subgenus. Taxon Ochotona qionglaiensis, which was recently described as a separate species, represents a relic mitochondrial lineage of Ochotona thibetana. Another recently described species, Ochotona yarlungensis, is a Nubra pika with its native mitochondrial DNA, firstly found for this species. Intraspecies variation was analysed for several species for the first time. Thus, new subspecies (Ochotona thibetana fengii ssp. n.) was found within O. thibetana.     

Osmoderma eremita as an indicator of species richness of beetles in tree hollows

The beetle Osmoderma eremita has received much attention in the last few years, as it is among those species with the highest priority in the European Union's Habitat Directive. In this paper the species is evaluated as a potential indicator and umbrella species for the endangered beetle fauna in tree hollows. To be useful as an indicator of a species-rich fauna it should be easy to inventory and be strongly correlated with the presence of other species. An umbrella species is a species which is so demanding that the protection of this species will automatically save many others. The species richness of saproxylic beetles and occupancy of O. eremita were surveyed in tree hollows in an area in southeastern Sweden by assessing the presence/absence of living and dead adults (including fragments) and larvae. The species richness was higher when O. eremita was present, both at tree and stand level. Several threatened species were associated with the presence of O. eremita, whereas others did not correlate with the occurrence of O. eremita. As O. eremita is easy to find and identify, it is useful as an indicator of stands with a rich beetle fauna in tree hollows. Osmoderma eremita can be used as an umbrella species, because if measures are taken to conserve O. eremita, many other species in the same habitat are also conserved. However, there are some beetles in tree hollows which seem to be more sensitive to habitat fragmentation than O. eremita, and may go extinct if only O. eremita is taken into consideration.