Studies on intercellular invasion in vitro using rabbit peritoneal neutrophil granulocytes. II. Adhesive interaction between cells.

A possible mechanism for intercellular invasion is that the strength of adhesion between host and invading cells is greater than the average of the strengths of homotypic adhesions. This hypothesis has been examined by a study of the kinetics of aggregation of dispersed populations of an invasive cell type (the rabbit peritoneal neutrophil granulocyte) and a host cell type (the chick embryo heart fibroblast) in shaken suspension culture. Since aggregation in mixed populations of the 2 cell types demonstrated tissue specificity, the hypothesis is not supported by these studies, heterotypic adhesions seem in fact to be weaker than homotypic adhesions.     

Mathematical modeling of humoral immune response suppression by passively administered antibodies in mice

Although passively administered antibodies are known to suppress the humoral immune response, the mechanism is not fully understood. Here, we developed a mathematical model to better understand the suppression phenomena in mice. Using this model, we tested the generally accepted but difficult to prove "epitope masking hypothesis." To simulate the hypothesis and clearly observe masking of epitopes, we modeled epitope-antibody and epitope-B-cell receptor interactions at the epitope level. To validate this model, we simulated the effect of the antibody affinity and quantity as well as the timing of administration on the suppression, and we compared the results with experimental observations reported in the literature. We then developed a simulation to determine whether the epitope-masking hypothesis alone can explain known immune suppression phenomena, especially the conflicting results on F(ab')2 fragment-induced suppression, which has been shown to be no suppression, or similar to or up to 1000-fold weaker than the suppression by intact antibody. We found that suppression was caused by a synergistic effect of both epitope masking and rapid antigen clearance. Although the latter hypothesis has lost support because FcgammaRI/III mutant mice show antibody-mediated suppression, our simulations predict that, even in FcgammaRI/III mutant mice, the immune response can be suppressed according to the antibody affinity. Our model also effectively reproduced the conflicting results obtained using F(ab')2 fragments. Thus, in contrast to the idea that the F(ab')2 results prove the FcgammaRIIb involvement in suppression, our mathematical model suggests that the epitope-masking hypothesis together with rapid antigen clearance explains the conflicting results.     

Body size and extinction risk in Australian mammals: An information‐theoretic approach

The critical weight range (CWR) hypothesis for Australian mammals states that extinctions and declines have been concentrated in species with body mass between 35 g and 5.5 kg. The biological basis for this hypothesis is that species of intermediate size are disproportionately impacted by introduced predators. The CWR hypothesis has received support from several statistical studies over the past decade, although the evidence is weaker or non‐existent for certain groups such as mesic‐zone mammals and arboreal mammals. In this study, we employ an information‐theoretic model selection approach to gain further insights into the relationship between body mass and extinction risk in Australian mammals. We find evidence, consistent with the CWR hypothesis, that extinction risk peaks at intermediate body masses for marsupials, rodents and ground‐dwelling species, but not for arboreal species. In contrast to previous studies, we find that the CWR describes extinction patterns in the mesic zone as well as the arid zone. In the mesic zone, there is also a weaker tendency for large species above the CWR to be more vulnerable, consistent with extinction patterns on other continents. We find that a more biological plausible Gaussian distribution consistently fits the data better than the polynomial models that have been used in previous studies. Our results justify conservation programmes targeted at species within the CWR across Australia.     

Relaxed pollinator-mediated selection weakens floral integration in self-compatible taxa of Leavenworthia (Brassicaceae)

Natural selection should favor the integration of floral traits that enhance pollen export and import in plant populations that rely upon pollinators. If this is true, then phenotypic correlations between floral traits should weaken in self-fertilizing groups that do not require pollinator visitation to produce seed. We tested this hypothesis in Leavenworthia, a plant genus in which there have been multiple independent losses of the sporophytic self-incompatibility system found throughout the Brassicaceae. In particular, we conducted phylogenetically independent contrasts of floral trait correlations between two pairs of self-incompatible (SI) and self-compatible (SC) sister taxa. In support of the hypothesis that pollinator-mediated selection integrates floral traits, we found that both SC Leavenworthia taxa have weaker overall floral correlations in comparison to sister taxa that rely upon pollinators. The two independently derived SC Leavenworthia flowers have significantly weaker stamen-petal or pistil-petal correlations, respectively, whereas the stamen-pistil correlation remains constant. These patterns suggest that relaxation of pollinator-mediated selection weakens the integration of traits associated with pollen export and import. The retention of high stamen-pistil correlations in the SC taxa of Leavenworthia further implies that the integration of these traits is either constrained or maintained by selection favoring the successful transfer of pollen within flowers to secure self-pollination.     

Influence of previous agonistic interactions with conspecifics on contest decisions

Recent wins and losses can inform individuals about their relative fighting abilities and modify their subsequent contest decisions. Using a mangrove rivulus, Kryptolebias marmoratus, we tested the hypothesis that visual and limited physical interactions can also convey information and modify subsequent contest decisions. Individuals were exposed to a stronger or weaker conspecific through a glass or a mesh partition before a contest with a size‐matched naïve opponent. Individuals were expected to (a) assess themselves to have worse/better fighting ability and behave less/more aggressively after having interacted with a stronger/weaker conspecific and (b) display different degrees of behavioural modifications for the two partition treatments (mesh‐partition > glass‐partition). The results showed that interactions with a stronger/weaker conspecific through a glass partition did not have a strong effect on the fish's subsequent contest behaviour. Restricted physical interaction with a stronger/weaker conspecific through a mesh partition, however, had an unexpected effect, causing individuals to behave more/less aggressively (matching the behaviour of the conspecifics) and/or win more/fewer subsequent contests. These results indicate that contest resolution is important for the fish to exhibit the loser–winner effects (i.e. behaving less/more aggressively after having lost/won against a stronger/weaker conspecific) detected in previous studies of the fish. We propose and discuss the possibility that the “behavioural matching” of the mesh‐partition treatment results from unresolved physical interactions with a stronger/weaker conspecific causing the individuals to either anticipate stronger/weaker opponents in subsequent competitions or assess themselves to be an equally good/bad fighter as the conspecific. The results of previous studies and the present study of the fish show that pre‐exposing an individual to the same type of conspecifics could elicit diverse, sometimes opposite, behavioural responses depending on how the individual is permitted to interact with the conspecific.     

Personality-specific carry-over effects on breeding

Carry-over effects describe the phenomenon whereby an animal''s previous conditions influence its subsequent performance. Carry-over effects are unlikely to affect individuals uniformly, but the factors modulating their strength are poorly known. Variation in the strength of carry-over effects may reflect individual differences in pace-of-life: slow-paced, shyly behaved individuals are thought to favour an allocation to self-maintenance over current reproduction, compared to their fast-paced, boldly behaved conspecifics (the pace-of-life syndrome hypothesis). Therefore, detectable carry-over effects on breeding should be weaker in bolder individuals, as they should maintain an allocation to reproduction irrespective of previous conditions, while shy individuals should experience stronger carry-over effects. We tested this prediction in black-legged kittiwakes breeding in Svalbard. Using miniature biologging devices, we measured non-breeding activity of kittiwakes and monitored their subsequent breeding performance. We report a number of negative carry-over effects of non-breeding activity on breeding, which were generally stronger in shyer individuals: more active winters were followed by later breeding phenology and poorer breeding performance in shy birds, but these effects were weaker or undetected in bolder individuals. Our study quantifies individual variability in the strength of carry-over effects on breeding and provides a mechanism explaining widespread differences in individual reproductive success.     

Evolutionary consequences of microhabitat: population-genetic structuring in kelp- vs. rock-associated chitons

Rafting has long been invoked as a key marine dispersal mechanism, but biologists have thus far produced little genetic evidence to support this hypothesis. We hypothesize that coastal species associated with buoyant seaweeds should experience enhanced population connectivity owing to rafting. In particular, invertebrates strongly associated with the buoyant bull-kelp Durvillaea antarctica might be expected to have lower levels of population-genetic differentiation than taxa mainly exploiting nonbuoyant substrates. We undertook a comparative genetic study of two codistributed, congeneric chiton species, assessing population connectivity at scales of 61-516 km, using ≥ 186 polymorphic AFLP loci per species. Consistent with predictions, population-genetic differentiation was weaker in the kelp-associated Sypharochiton sinclairi than in the rock-associated S. pelliserpentis. Additionally, while we found a significant positive correlation between genetic and oceanographic distances in both chiton species, the correlation was stronger in S. pelliserpentis (R(2) = 0.28) than in S. sinclairi (R(2) = 0.18). These data support the hypothesis that epifaunal taxa can experience enhanced population-genetic connectivity as a result of their rafting ability.     

Sex-biased immunity is driven by relative differences in reproductive investment

Sex differences in immunity are often observed, with males generally having a weaker immune system than females. However, recent data in a sex-role-reversed species in which females compete to mate with males suggest that sexually competitive females have a weaker immune response. These findings support the hypothesis that sexual dimorphism in immunity has evolved in response to sex-specific fitness returns of investment in traits such as parental investment and longevity, but the scarcity of data in sex-reversed species prevents us from drawing general conclusions. Using an insect species in which males make a large but variable parental investment in their offspring, we use two indicators of immunocompetence to test the hypothesis that sex-biased immunity is determined by differences in parental investment. We found that when the value of paternal investment was experimentally increased, male immune investment became relatively greater than that of females. Thus, in this system, in which the direction of sexual competition is plastic, the direction of sex-biased immunity is also plastic and appears to track relative parental investment.     

Interrelationships of Cotyledonary Shoots in Pisum sativum

Unequal two shoot systems of tall and dwarf varieties of Pisum sativum L. ev, Improved Pilot and Meteor, respectively, were used in experiments where manipulative treatments involving the removal of one or other or both of the shoot apices were carried out. These were combined with GA treatments. Twenty four hours after treatment, ¹⁴CO₂ was applied to the lowest expanded leaf on the larger shoot, and the distribution of radioactivity was determined after a further 24 hours. Removal ot the apex of the larger shoot reduced the level of translocation from the treated leaf, the effect being enhanced by the additional removal of the other apex. This (Heel was more marked in the tall than in the dwarf variety. In untreated control plants of both varieties there was very little transfer ot labelled material from the larger (dominant) shoot to the smaller (weaker) shoot. This pattern was not affected by the removal of the apex from the weaker shoot. In Improved Pilot, removal of the apex from the stronger shoot led to considerable transfer of radioactive material to the weaker shoot, GA treatment having little effect. However, in Meteor, transfer of radioactivity from the stronger to the weaker shoot. after removal of the apex from the stronger shoot, only occurred after the application of GA. Removal of both shoot apices again resulted in low levels of transfer of labelled material to the weaker shoot in both varieties. These results are consistent with the hypothesis that there is competition between the two shoots for photosynthates produced by the leaves and that treatments reducing the competitive ability of one shoot, reduce the level of nutrients received by that shoot and can result in transfer of materials from it to the other shoot. Continuation of such a situation will result in increased inequality and perhaps ultimately in the death of the weaker shoot.     

The fitness advantage of a high-performance weapon

Weapons used in combat between males are usually attributed to sexual selection, which operates via a fitness advantage for males with weapons of better 'quality'. Because the performance capacity of morphological traits is typically considered the direct target of selection, Darwin's intrasexual selection hypothesis can be modified to predict that variation in reproductive success should be explained by variation in performance traits relevant to combat. Despite such a straightforward prediction, tests of this hypothesis are conspicuously lacking. We show that territorial male collared lizards with greater bite-force capacity sire more offspring than weaker biting rivals but exhibit no survival advantage. We did not detect stabilizing or disruptive selection on bite-force capacity. Taken together, these results support the hypothesis that superior weapon performance provides a fitness advantage through increased success in male contests. Sexual selection on weapon performance therefore appears to be a force driving the evolution and maintenance of sexual dimorphism in head shape.  © 2009 The Linnean Society of London, Biological Journal of the Linnean Society , 2009, 96 , 840–845.     

A model for photoreceptor-based magnetoreception in birds

A large variety of animals has the ability to sense the geomagnetic field and utilize it as a source of directional (compass) information. It is not known by which biophysical mechanism this magnetoreception is achieved. We investigate the possibility that magnetoreception involves radical-pair processes that are governed by anisotropic hyperfine coupling between (unpaired) electron and nuclear spins. We will show theoretically that fields of geomagnetic field strength and weaker can produce significantly different reaction yields for different alignments of the radical pairs with the magnetic field. As a model for a magnetic sensory organ we propose a system of radical pairs being 1) orientationally ordered in a molecular substrate and 2) exhibiting changes in the reaction yields that affect the visual transduction pathway. We evaluate three-dimensional visual modulation patterns that can arise from the influence of the geomagnetic field on radical-pair systems. The variations of these patterns with orientation and field strength can furnish the magnetic compass ability of birds with the same characteristics as observed in behavioral experiments. We propose that the recently discovered photoreceptor cryptochrome is part of the magnetoreception system and suggest further studies to prove or disprove this hypothesis.     

Microbial growth promotion studies of exochelin MN and analogues thereof

The ability of exochelin MN and three synthetic analogues to promote the growth of various strains of mycobacteria and Gram-negative bacteria was investigated. The results indicated that growth promotion ability of these compounds depends either on ligand exchange with mycobactin or on the exochelin permease. Despite stronger iron complexing capacity, the structural analogues showed weaker growth promotion ability than exochelin MN, which further supported our hypothesis of pH-dependent iron(III)-release of exochelin MN.     

Outlier Removal and the Relation with Reporting Errors and Quality of Psychological Research

Background

The removal of outliers to acquire a significant result is a questionable research practice that appears to be commonly used in psychology. In this study, we investigated whether the removal of outliers in psychology papers is related to weaker evidence (against the null hypothesis of no effect), a higher prevalence of reporting errors, and smaller sample sizes in these papers compared to papers in the same journals that did not report the exclusion of outliers from the analyses.

Methods and Findings

We retrieved a total of 2667 statistical results of null hypothesis significance tests from 153 articles in main psychology journals, and compared results from articles in which outliers were removed (N = 92) with results from articles that reported no exclusion of outliers (N = 61). We preregistered our hypotheses and methods and analyzed the data at the level of articles. Results show no significant difference between the two types of articles in median p value, sample sizes, or prevalence of all reporting errors, large reporting errors, and reporting errors that concerned the statistical significance. However, we did find a discrepancy between the reported degrees of freedom of t tests and the reported sample size in 41% of articles that did not report removal of any data values. This suggests common failure to report data exclusions (or missingness) in psychological articles.

Conclusions

We failed to find that the removal of outliers from the analysis in psychological articles was related to weaker evidence (against the null hypothesis of no effect), sample size, or the prevalence of errors. However, our control sample might be contaminated due to nondisclosure of excluded values in articles that did not report exclusion of outliers. Results therefore highlight the importance of more transparent reporting of statistical analyses.     

Circularity and Independence in Phylogenetic Tests of Ecological Hypotheses

It has been asserted that in order to avoid circularity in phylogenetic tests of ecological hypotheses, one must exclude from the cladistic analysis any characters that might be correlated with that hypothesis. The argument assumes that selective correlation leads to lack of independence among characters and may thus bias the analysis. This argument conflates the idea of independence between the ecological hypothesis and the phylogeny with independence among characters used to construct the tree. We argue that adaptation or selection does not necessarily result in the non-independence of characters, and that characters for a cladistic analysis should be evaluated as homology statements rather than functional ones. As with any partitioning of data, character exclusion may lead to weaker phylogenetic hypotheses, and the practice of mapping characters onto a tree, rather than including them in the analysis, should be avoided. Examples from pollination biology are used to illustrate some of the theoretical and practical problems inherent in character exclusion.     

-混合误差下非参数回归权函数估计的渐近正态性

本文在一定条件下讨论了－混合误差下非参数回归权函数估计的渐近正态性，并且减弱了文献［３］的条件，证明方法大大简化了。     

Phosphohexose isomerase polymorphism of pigs

Using starch gel electrophoresis, polymorphism of phosphohexose isomerase (PHI) was found in haemolysed swine erythrocytes.
Three different phenotypes A, AB and B were observed. They are determined by two autosomal codominant alleles A and B. Homozygous types have three fractions; a strong middle band flanked by two weaker ones. The heterozygous types have five fractions, three strong bands in the middle with weaker anodic and catodic bands.
Segregation data in the family material support this hypothesis. The age does not influence the pattern of the PHI types.     

Role of aromatic side chains in the binding of volatile general anesthetics to a four-alpha-helix bundle

Currently, the mechanism by which anesthesia occurs is thought to involve the direct binding of inhaled anesthetics to ligand-gated ion channels. This hypothesis is being studied using four-alpha-helix bundles as model systems for the transmembrane domains of the natural "receptor" proteins. This study concerns the role in anesthetic binding played by aromatic side chains in the binding cavity of a four-alpha-helix bundle designed to assume a Rop-like fold. Specifically, the effect of the substitution W15Y on bundle structure, stability, and anesthetic binding energetics was investigated. No appreciable effect of substituting W for Y on the secondary structure or the thermodynamic stability of the four-alpha-helix bundle was identified. However, the substitution W15Y resulted in about 6- and 3-fold decreases in halothane and chloroform binding affinities, respectively. This effect may reflect weaker dipole-aromatic quadrupole interactions between the aromatic side chain and the anesthetic in the tyrosine-containing species, which possesses the smaller aromatic ring system. For these anesthetic binding proteins, this class of interaction occurs when the permanent nonspherical distribution of electrons in the aromatic ring systems interact with the weakly acidic CH group of the anesthetics.     

A theoretical consideration of fundamental biological phenomena on cell-specific mitosis-inhibiting protein excretion hypothesis

A new hypothesis on mitotic control mechanism in eukaryotic cells has been recently proposed. The hypothesis is based on a concept obtained from studies on mitotic control mechanism in the regenerating rat liver. The concept is that there exists a double layered pattern of humoral factors; a primary mitotic inhibitor and secondary mitotic inhibitors or stimulators. The primary mitotic inhibitor is a protein and has been termed cell-specific mitosis-inhibiting protein.According to the concept several aspects of mitosis of the hepatocyte and the related phenomena are discussed. The putative form of the cell-specific mitosis-inhibiting protein is searched for in some fundamental biological phenomena such as immune response (antibody or T-cell factor), fibrogenesis (procollagen) and myogenesis (myosin). The origin of the polypeptide hormone or the organizer is tentatively inferred on the same line of consideration. Some biological aspects of senescence are also discussed.The hypothesis, cell-specific mitosis-inhibiting protein excretion hypothesis, may offer a new theoretical framework to our modern biology.     

APPLICATION OF PHYLOGENETIC PRINCIPLES TO TESTING EVOLUTIONARY SCENARIOS: A COMMENT ON KACZMARSKA ET AL. “MOLECULAR PHYLOGENY OF SELECTED MEMBERS OF THE ORDER THALASSIOSIRALES (BACILLARIOPHYTA) AND EVOLUTION OF THE FULTOPORTULA”1

While rigorous techniques have usually been used to generate phylogenetic trees from molecular data, morphological analysis has sometimes been more informal. A recent example was a study of the evolution of the fultoportula in the diatom order Thalassiosirales ( Kaczmarska et al. 2006 ). Phylogeny was inferred using modern phylogenetic principles applied to nuclear SSU rDNA sequences, but inferences about morphological character evolution were made using noncanonical reasoning and evolutionary scenario building. The preferred hypothesis posited that marginal fultoportulae evolved from the marginal ridge of Lithodesmiales. A related hypothesis suggested that fultoportulae in the valve center were not homologous with those near the valve margin. Shared symplesiomorphies, shared homoplasies, gaps in the fossil record, and subtle morphological differences between central‐ and marginal‐area fultoportulae were offered as the primary evidence for these scenarios. The literature has demonstrated such arguments to be either irrelevant or logically weaker than inferences made under the tests of similarity, conjunction, and congruence. Five prior hypotheses about the origin and evolution of the fultoportula were examined in this study using these tests. The hypothesis that the areola evolved into the multistrutted process, which evolved into the fultoportula, was best supported.     

Dynamic body acceleration increases by 20% during flight ontogeny of greylag geese Anser anser

Despite our knowledge of the biophysical and behavioural changes during flight ontogeny in juvenile birds, little is known about the changes in the mechanical aspects of energy expenditure during early flight development, particularly in migratory species. Here, we investigate in a unique experimental setup how energy expended during flights changes over time beginning with early ontogeny. We calculate overall dynamic body acceleration (ODBA) as a proxy for energy expenditure in a group of hand raised greylag geese Anser anser trained to fly behind a microlight aircraft. We propose two potential hypotheses; energy expenditure either increases with increasing physiological suitability (the ‘physical development hypothesis’), or decreases as a result of behavioural improvements mitigating flight costs (the ‘behavioural development hypothesis’). There was a significant temporal increase of flight duration and ODBA over time, supporting the ‘physical development hypothesis’. This suggests that early on in flight ontogeny behavioural development leading to flight efficiency plays a weaker role in shaping ODBA changes than the increased physical ability to expend energy in flight. We discuss these findings and the implications of flight development on the life history of migratory species.