Fine mapping of qHd1, a minor heading date QTL with pleiotropism for yield traits in rice (Oryza sativa L.)

Key message

A minor QTL for heading date located on the long arm of rice chromosome 1 was delimitated to a 95.0-kb region using near isogenic lines with sequential segregating regions.

Abstract

Heading date and grain yield are two key factors determining the commercial potential of a rice variety. In this study, rice populations with sequential segregating regions were developed and used for mapping a minor QTL for heading date, qHd1. A total of 18 populations in six advanced generations through BC₂F₆ to BC₂F₁₁ were derived from a single BC₂F₃ plant of the indica rice cross Zhenshan 97 (ZS97)///ZS97//ZS97/Milyang 46. The QTL was delimitated to a 95.0-kb region flanked by RM12102 and RM12108 in the terminal region of the long arm of chromosome 1. Results also showed that qHd1 was not involved in the photoperiodic response, having an additive effect ranging from 2.4 d to 2.9 d observed in near isogenic lines grown in the paddy field and under the controlled conditions of either short day or long day. The QTL had pleiotropic effects on yield traits, with the ZS97 allele delaying heading and increasing the number of spikelets per panicle, the number of grains per panicle and grain yield per plant. The candidate region contains ten annotated genes including two genes with functional information related to the control of heading date. These results lay a foundation for the cloning of qHd1. In addition, this kind of minor QTLs could be of great significance in rice breeding for allowing minor adjustment of heading date and yield traits.     

Integrated effects of organic,inorganic and biological amendments on methane emission,soil quality and rice productivity in irrigated paddy ecosystem of Bangladesh: field study of two consecutive rice growing seasons

Aims

Effects of different soil amendments were investigated on methane (CH₄) emission, soil quality parameters and rice productivity in irrigated paddy field of Bangladesh.

Methods

The experiment was laid out in a randomized complete block design with five treatments and three replications. The experimental treatments were urea (220 kg ha^?1) + rice straw compost (2 t ha^?1) as a control, urea (170 kg ha^?1) + rice straw compost (2 t ha^?1) + silicate fertilizer, urea (170 kg ha^?1) + sesbania biomass (2 t ha^?1 ) + silicate fertilizer, urea (170 kg ha^?1) + azolla biomass (2 t ha^?1) + cyanobacterial mixture 15 kg ha^?1 silicate fertilizer, urea (170 kg ha^?1) + cattle manure compost (2 t ha^?1) + silicate fertilizer.

Results

The average of two growing seasons CH₄ flux 132 kg ha^?1 was recorded from the conventional urea (220 kg ha^?1) with rice straw compost incorporated field plot followed by 126.7 (4 % reduction), 130.7 (1.5 % reduction), 116 (12 % reduction) and 126 (5 % reduction) kg CH₄ flux ha^?1 respectively, with rice straw compost, sesbania biomass, azolla anabaena and cattle manure compost in combination urea and silicate fertilizer applied plots. Rice grain yield was increased by 15 % and 10 % over the control (4.95 Mg ha^?1) with silicate plus composted cattle manure and silicate plus azolla anabaena, respectively. Soil quality parameters such as soil organic carbon, total nitrogen, microbial biomass carbon, soil redox status and cations exchange capacity were improved with the added organic materials and azolla biofertilizer amendments with silicate slag and optimum urea application (170 kg ha^?1) in paddy field.

Conclusion

Integrated application of silicate fertilizer, well composted organic manures and azolla biofertilizer could be an effective strategy to minimize the use of conventional urea fertilizer, reducing CH₄ emissions, improving soil quality parameters and increasing rice productivity in subtropical countries like Bangladesh.     

Successive straw biochar application as a strategy to sequester carbon and improve fertility: A pot experiment with two rice/wheat rotations in paddy soil

Aims

A pot study spanning four consecutive crop seasons was conducted to compare the effects of successive rice straw biochar/rice straw amendments on C sequestration and soil fertility in rice/wheat rotated paddy soil.

Methods

We adopted 4.5 t ha^?1, 9.0 t ha^?1 biochar and 3.75 t ha^?1 straw for each crop season with an identical dose of NPK fertilizers.

Results

We found no major losses of biochar-C over the 2-year experimental period. Obvious reductions in CH₄ emission were observed from rice seasons under the biochar application, despite the fact that the biochar brought more C into the soil than the straw. N₂O emissions with biochar were similar to the controls without additives over the 2-year experimental period. Biochar application had positive effects on crop growth, along with positive effects on nutrient (N, P, K, Ca and Mg) uptake by crop plants and the availability of soil P, K, Ca and Mg. High levels of biochar application over the course of the crop rotation suppressed NH₃ volatilization in the rice season, but stimulated it in the wheat season.

Conclusions

Converting straw to biochar followed by successive application to soil is viable for soil C sequestration, CH₄ mitigation, improvements of soil and crop productivity. Biochar soil amendment influences NH₃ volatilization differently in the flooded rice and upland wheat seasons, respectively.     

Impact of elevated temperatures on greenhouse gas emissions in rice systems: interaction with straw incorporation studied in a growth chamber experiment

Aims

Two pot experiments in a “walk-in” growth chamber with controlled day and night temperatures were conducted to investigate the influence of elevated temperatures along with rice straw incorporation on methane (CH₄) and nitrous oxide (N₂O) emissions as well as rice yield.

Methods

Three temperature regimes–29/25, 32/25, and 35/30 °C (Exp. I) and 29/22, 32/25, and 35/28 °C (Exp. II), representing daily maxima/minima were used in the study. Two amounts of rice straw (0 and 6 t ha^?1) were applied with four replications in each temperature regime. CH₄ and N₂O emissions as well as soil redox potential (Eh) were monitored weekly throughout the rice-growing period.

Results

Elevated temperatures increased CH₄ emission rates, with a more pronounced effect from flowering to maturity. The increase in emissions was further enhanced by incorporation of rice straw. A decrease in soil Eh to <?100 mV and CH₄ emissions was observed early in rice straw–incorporated pots while the soil without straw did not reach negative Eh levels (Exp. I) or showed a delayed decrease (Exp. II). Moreover, soil with high organic C (Exp. II) had higher CH₄ emissions. In contrast to CH₄ emissions, N₂O emissions were negligible during the rice-growing season. The global warming potential (GWP) was highest at high temperature with rice straw incorporation compared with low temperature without rice straw. On the other hand, the high temperature significantly increased spikelet sterility and reduced grain yield (p?<?0.05).

Conclusions

Elevated temperature increased GWP while decreased rice yield. This suggests that global warming may result in a double negative effect: higher emissions and lower yields.     

Rice biomass production and carbon cycling in 13CO2 pulse-labeled microcosms with different soils under submerged conditions

Aims

Rice fields are an important source for the greenhouse gas methane. Plants play an essential role in carbon supply for soil microbiota, but the influence of the microbial community on carbon cycling is not well understood.

Methods

Microcosms were prepared using sand-vermiculite amended with different soils and sediments, and planted with rice. The microcosms at different growth stages were pulse-labeled with ¹³CO₂ followed by tracing ¹³C in plant, soil and atmospheric carbon pools and quantifying the abundance of methanogenic archaea in rhizosphere soil.

Results

Overall,?>85 % of the freshly assimilated carbon was allocated in aboveground plant biomass, approximately 10 % was translocated into the roots and?4, but emission of ¹³C-labeled CH₄ started immediately and ¹³C enrichment revealed that plant-derived carbon was an important source for methanogenesis. The results further demonstrated that carbon assimilation and translocation processes, microbial abundance and gas emission were not only affected by the plant growth stage, but also by the content and type of soil in which the rice plants grew.

Conclusions

The study illustrates the close ties between plant physiology, soil properties and microbial communities for carbon turnover and ecosystem functioning.     

Soil carbon dioxide and methane fluxes as affected by tillage and N fertilization in dryland conditions

Background and aims

The effects of tillage and N fertilization on CO₂ and CH₄ emissions are a cause for concern worldwide. This paper quantifies these effects in a Mediterranean dryland area.

Methods

CO₂ and CH₄ fluxes were measured in two field experiments. A long-term experiment compared two types of tillage (NT, no-tillage, and CT, conventional intensive tillage) and three N fertilization rates (0, 60 and 120 kg N ha^?1). A short-term experiment compared NT and CT, three N fertilization doses (0, 75 and 150 kg N ha^?1) and two types of fertilizer (mineral N and organic N with pig slurry). Aboveground and root biomass C inputs, soil organic carbon stocks and grain yield were also quantified.

Results

The NT treatment showed a greater mean CO₂ flux than the CT treatment in both experiments. In the long-term experiment CH₄ oxidation was greater under NT, whereas in the short-term experiment it was greater under CT. The fertilization treatments also affected CO₂ emissions in the short-term experiment, with the greatest fluxes when 75 and 150 kg organic N ha^?1 was applied. Overall, the amount of CO₂ emitted ranged between 0.47 and 6.0 kg CO₂?equivalent kg grain^?1. NT lowered yield-scaled emissions in both experiments, but these treatment effects were largely driven by an increase in grain yield.

Conclusions

In dryland Mediterranean agroecosystems the combination of NT and medium rates of either mineral or organic N fertilization can be an appropriate strategy for optimizing CO₂ and CH₄ emissions and grain yield.     

Contribution of winter cover crop amendments on global warming potential in rice paddy soil during cultivation

Background and aims

Winter cover crop cultivation during the fallow season has been strongly recommended in mono-rice paddy soil to improve soil quality, but its impact in increasing the greenhouse gases (GHGs) emissions during rice cultivation when applied as green manure has not been extensively studied. In order to recommend a preferable cover crop which can increase soil productivity and suppress GHG emission impact in paddy soil, the effect of winter cover crop addition on rice yield and total global warming potential (GWP) was studied during rice cultivation.

Methods

Two cover crops (Chinese milk vetch, Astragalus sinicus L., hereafter vetch, and rye, Secale cerealis) having different carbon/nitrogen (C/N) ratios were cultivated during the rice fallow season. The fresh above-ground biomasses of vetch [25 Mg fresh weight (FW) ha^?1, moisture content (MC) 86.9 %, C/N ratio 14.8] and rye (29 Mg rye FW ha^?1, MC 78.0 %, C/N ratio 64.3) were incorporated as green manure 1 week before rice transplanting (NPK + vetch, and NPK + rye). The NPK treatment was installed for comparison as the control. During the rice cultivation, methane (CH₄) and nitrous oxide (N₂O) gases were collected simultaneously once a week using the closed-chamber method, and carbon dioxide (CO₂) flux was estimated using the soil C balance analysis. Total GWP impact was calculated as CO₂ equivalents by multiplying the seasonal CH₄, CO₂, and N₂O fluxes by 25, 1, and 298, respectively.

Results

Methane mainly covered 79–81 % of the total GWP, followed by CO₂ (14–17 %), but the N₂O contribution was very small (2–5 %) regardless of the treatment. Seasonal CH₄ fluxes significantly increased to 61 and 122 % by vetch and rye additions, respectively, compared to that of the NPK treatment. Similarly, the estimated seasonal CO₂ fluxes increased at about 197 and 266 % in the vetch and rye treatments, respectively, compared with the NPK control plots. Based on these results, the total GWP increased to 163 and 221 % with vetch and rye applications, respectively, over the control treatment. Rice productivity was significantly increased with the application of green manure due to nutrient supply; however, vetch was more effective. Total GWP per grain yield was similar with the vetch (low C/N ratio) and NPK treatments, but significantly increased with the rye (high C/N ratio) application, mainly due to its higher CH₄ emission characteristic and lower rice productivity increase.

Conclusions

A low C/N ratio cover crop, such as vetch, may be a more desirable green manure to reduce total GWP per grain yield and to improve rice productivity.     

Responses of CO2 efflux from an alpine meadow soil on the Qinghai Tibetan Plateau to multi-form and low-level N addition

Aims

To assess the effects of atmospheric N deposition on the C budget of an alpine meadow ecosystem on the Qinghai–Tibetan Plateau, it is necessary to explore the responses of soil-atmosphere carbon dioxide (CO₂) exchange to N addition.

Methods

Based on a multi-form, low-level N addition experiment, soil CO₂ effluxes were monitored weekly using the static chamber and gas chromatograph technique. Soil variables and aboveground biomass were measured monthly to examine the key driving factors of soil CO₂ efflux.

Results

The results showed that low-level N input tended to decrease soil moisture, whereas medium-level N input maintained soil moisture. Three-year N additions slightly increased soil inorganic N pools, especially the soil NH ₄ ⁺ -N pool. N applications significantly increased aboveground biomass and soil CO₂ efflux; moreover, this effect was more significant from NH ₄ ⁺ -N than from NO ₃ ^? -N fertilizer. In addition, the soil CO₂ efflux was mainly driven by soil temperature, followed by aboveground biomass and NH ₄ ⁺ -N pool.

Conclusions

These results suggest that chronic atmospheric N deposition will stimulate soil CO₂ efflux in the alpine meadow on the Qinghai–Tibetan Plateau by increasing available N content and promoting plant growth.     

Impact of biochar application on nitrogen nutrition of rice, greenhouse-gas emissions and soil organic carbon dynamics in two paddy soils of China

Aims

Two field microcosm experiments and ¹⁵N labeling techniques were used to investigate the effects of biochar addition on rice N nutrition and GHG emissions in an Inceptisol and an Ultisol.

Methods

Biochar N bioavailability and effect of biochar on fertilizer nitrogen-use efficiency (NUE) were studied by ¹⁵N-enriched wheat biochar (7.8803 atom% ¹⁵N) and fertilizer urea (5.0026 atom% ¹⁵N) (Experiment I). Corn biochar and corn stalks were applied at 12 Mg?ha^?1 to study their effects on GHG emissions (Experiment II).

Results

Biochar had no significant impact on rice production and less than 2 % of the biochar N was available to plants in the first season. Biochar addition increased soil C and N contents and decreased urea NUE. Seasonal cumulative CH₄ emissions with biochar were similar to the controls, but significantly lower than the local practice of straw amendment. N₂O emissions with biochar were similar to the control in the acidic Ultisol, but significantly higher in the slightly alkaline Inceptisol. Carbon-balance calculations found no major losses of biochar-C.

Conclusion

Low bio-availability of biochar N did not make a significantly impact on rice production or N nutrition during the first year. Replacement of straw amendments with biochar could decrease CH₄ emissions and increase SOC stocks.     

Methane and nitrous oxide emissions from direct-seeded and seedling-transplanted rice paddies in southeast China

Background and aims

The rice production is experiencing a shift from conventionally seedling-transplanted (TPR) to direct-seeded (DSR) cropping systems in Southeast Asia. Besides the difference in rice crop establishment, water regime is typically characterized as water-saving moist irrigation for DSR and flooding-midseason drainage-reflooding and moist irrigation for TPR fields, respectively. A field experiment was conducted to quantify methane (CH₄) and nitrous oxide (N₂O) emissions from the DSR and TPR rice paddies in southeast China.

Methods

Seasonal measurements of CH₄ and N₂O fluxes from the DSR and TPR plots were simultaneously taken by static chamber-GC technique.

Results

Seasonal fluxes of CH₄ averaged 1.58 mg m^?2 h^?1 and 1.02 mg m^?2 h^?1 across treatments in TPR and DSR rice paddies, respectively. Compared with TPR cropping systems, seasonal N₂O emissions from DSR cropping systems were increased by 49 % and 46 % for the plots with or without N application, respectively. The emission factors of N₂O were estimated to be 0.45 % and 0.69 % of N application, with a background emission of 0.65 and 0.95 kg N₂O-N ha^?1 under the TPR and DSR cropping regimes, respectively. Rice biomass and grain yield were significantly greater in the DSR than in the TPR cropping systems. The net global warming potential (GWP) of CH₄ and N₂O emissions were comparable between the two cropping systems, while the greenhouse gas intensity (GHGI) was significantly lower in the DSR than in the TPR cropping systems.

Conclusions

Higher grain yield, comparable GWP, and lower GHGI suggest that the DSR instead of conventional TPR rice cropping regime would weaken the radiative forcing of rice production in terms of per unit of rice grain yield in China, and DSR rice cropping regime could be a promising rice development alternative in mainland China.     

Transgenic Bt rice has adverse impacts on CH4 flux and rhizospheric methanogenic archaeal and methanotrophic bacterial communities

Background and Aims

The effect of transgenic insect-resistant crops on soil microorganisms has become an issue of public concern. The goal of this study was to firstly realize the variation of in situ methane (CH₄) emission flux and methanogenic and methanotrophic communities due to planting transgenic Bt rice (Bt) cultivar.

Methods

CH₄ emitted from paddy soil was collected by static closed chamber technique. Denaturing gradient gel electrophoresis and real-time PCR methods were employed to analyze methanogenic archaeal and methanotrophic bacterial community structure and abundance.

Results

Results showed that planting Bt rice cultivar effectively reduced in situ CH₄ emission flux and methanogenic archaeal and methanotrophic bacterial community abundance and diversity. Data analysis showed that in situ CH₄ emission flux increased significantly with the increase of methanogenic archaeal abundance (R ² ?=?0.839, p?<?0.001) and diversity index H′ (R ² ?=?0.729, p?<?0.05), whereas was not obviously related to methanotrophic bacterial community.

Conclusions

Our results suggested that the lower in situ CH₄ emission flux from Bt soil may result from lower methanogenic archaeal community abundance and diversity, lower methanogenic activity and higher methanotrophic activity. Moreover, our results inferred that specific functional microorganisms may be a more sensitive indicator than the total archaeal, bacterial or fungal population to assess the effects of transgenic insect-resistant plants on soil microorganisms.     

Variation in responses to boron in rice

Background and aims

Boron (B) deficiency depresses grain set and grain yield of wheat and maize while having little effect on their vegetative growth. This paper describes effects of B deficiency in rice and how these vary with planting season and variety.

Methods

Three rice varieties (KDML105, CNT1, SPR1) were grown in sand culture without (B0) and with 10 μM (B10) B added to the nutrient solution, in the cool season of 2007/08 and 2008/09 and the hot season of 2011 in Chiang Mai, Thailand (18°47′N, 98°59′E). Boron responses were measured in growth and yield parameters, pollen viability and B concentration of the flag leaf and anthers at anthesis.

Results

Grain weight was strongly depressed by B deficiency ranging from 28 % in SPR1 to 79 % in CNT1, and the yield was much lower in the cool season than in the hot season plantings. The variation in grain weight was closely associated with grain set and number of spikelets but not with shoot dry weight or tillering. Grain set was closely related to pollen viability, and both were increased with increasing anther B concentration at >20 mg B kg^?1. In addition to its adverse effect on grain set, B deficiency also depressed grain filling and weight of individual grains in rice.

Conclusions

Boron deficiency depressed rice grain yield through adverse effects on reproductive growth, panicle and spikelet formation and grain filling, in addition to grain set as in wheat and maize.     

Dynamics of fertilizer-derived organic nitrogen fractions in an arable soil during a growing season

Background

Inorganic fertilizer is one of the most important anthropogenic inputs which influences soil nutrient turnover in agricultural ecosystems. However, as the key process involved in the maintenance, transformation and stability of soil nitrogen (N), the incorporation and allocation of fertilizer N between different soil organic N (SON) fractions in a growing season remains largely unknown.

Methods

In this study, a field experiment was conducted in triplicate of micro-plots and a total of 200 kg N ha^?1 (¹⁵?N-labeled (NH₄)₂SO₄, 98 atom %) was applied as a basal dressing and two top dressings, at jointing and filling stages, respectively, to a maize crop during one growing season. The distribution and seasonal dynamics of fertilizer N in different SON fractions (i.e., amino acids, amino sugars, hydrolyzable ammonium N and acid insoluble-N) were measured by liquid/gas chromatography–mass spectrometry (LC/GC-MS) and element analysis-combustion-isotope ratio mass spectrometry (EA-C-IRMS) techniques. Path analysis was used to evaluate the transformation processes between organic N fractions derived from fertilizer and N supply strategy in soil-plant system.

Results

The accumulation of fertilizer-derived N in different organic fractions was season-specific. At jointing stage, preferential enrichment of ¹⁵?N was found in soil amino acids plus amino sugars, indicating the active biological immobilization of basal dressing fertilizer N. Nevertheless, there is still a small proportion of fertilizer N stabilized in the acid insoluble fraction. The accumulation of the residual fertilizer N in hydrolyzable ammonium N reached a maximum at filling stage and then declined significantly, implying the rapid release of the fertilizer N remained in mineral forms. The contents of amino acids changed slightly, but they played a very important role in mediating SON transformation.

Conclusion

The hydrolyzable ammonium N was a temporary pool for rapid fertilizer N retention and simultaneously was apt to release N for crop uptake in the current season. In contrast, the amino acids could serve as a transitional pool of available N in the soil-crop system, while the acid insoluble fraction was as a stable pool of fertilizer N. Importantly, there is an interim shift among different pools to maintain soil N turnover; hence N in the amino acid fraction mediates N supply and the depolymerization of SON constituents controls the proceeding of fertilizer N cycling in the soil-plant system.     

Comparison of methane, nitrous oxide fluxes and CO2 respiration rates from a Mediterranean cork oak ecosystem and improved pasture

Background and aims

During the recent decades, cork oak (Q. suber) mortality has been increasing in Mediterranean oak woodland endangering the economical and environmental sustainability of the “montado” ecosystem. This fact in combination with climate change and conversion of forestland to pasture may significantly affect the soil-atmosphere greenhouse gases (GHGs) exchange. Our study evaluates the impact of oak trees as compared to pasture on net ecosystem GHG (CH_4, N₂O, and CO₂) exchange as well as the main environmental factors influencing this exchange.

Methods

We used field chamber measurements for the collection of GHGs under three different conditions: 1) open area (OA), 2) under tree canopy area (UC) and 3) improved pasture (IP). Experiments were done under typical Mediterranean climate at central Portugal in 2010 and 2011.

Results

The UC had higher nitrification potential, soil C/N ratio, electrical conductivity, litter input and soil organic matter (SOM) than OA and IP. SOM positively correlated with soil CH₄ and N₂O fluxes but not with soil CO₂ respiration rates. Soil water content (SWC) drives both CH₄ and N₂O fluxes. Under certain conditions, when SWC reached a threshold (7 % for CH₄ and 3 % for N₂O) the result was net uptake and that net uptake increased with SWC. This was the case for the UC and OA. Conversely, for the IP soil water content above 4 % promoted net CH₄ release.

Conclusions

Our results show that cork oak influences soil properties and consequently GHGs fluxes. In the UC the input of litter for SOM together with soil moisture, favoured microbiological activity and related GHGs fluxes. Soil temperature is a secondary factor in the studied conditions. Our results also emphasized the potential impact posed by decreased cork oak tree density in the functioning of the “montado” ecosystem.     

Diurnal variation in methane efflux at different growth stages of tropical rice

Diurnal variation in CH₄ efflux from continuously flooded fields planted to rice (Oryza sativa L. cv. IR-36) was examined at different crop growth stages using a closed chamber method during the wet season. CH₄ emission showed a distinct diurnal pattern especially at tillering, panicle initiation and maturity stages of a field-grown rice crop, with maximum emission in the early afternoon (12.00 to 15.00) followed by a decline to a minimum around midnight. Among several variables (ambient temperature, flood water temperature, redox potential, soil pH, and root oxidase activity), a significant negative correlation existed between oxidase activity of the root base and diurnal fluctuations in CH₄ efflux at tillering stage. Evidence also suggested that redox status in the rhizosphere region and atmospheric, soil, and water temperatures influenced CH₄ emission from rice fields probably by their contrasting effects on CH₄ production and oxidation.     

Pyrophosphate: fructose-6-phosphate 1-phosphotransferase (PFP) regulates carbon metabolism during grain filling in rice

Key message

Decreased PFPase activity in rice perturbs the equilibration of carbon metabolism during grain filling but has no visible phenotypic effects during the vegetative and reproductive growth stages.

Abstract

Starch is a primary energy reserve for various metabolic processes in plant. Despite much advance has been achieved in pathways involved in starch biosynthesis, information was still lacked for precise regulation related to carbon metabolism during seed filling in rice (Oryza sativa). The objective of this study was to identify and characterize new gene associated with carbon metabolism during grain filling. By screening our chemical mutant pool, two allelic mutants exhibiting floury endosperm were isolated. No visible phenotypic defects were observed during both the vegetative and reproductive growth stages, except for the floury-like endosperm of grains with significantly reduced kernel thickness, 1000-grain weight and total starch content. Map-based cloning revealed that the mutant phenotypes were controlled by a gene encoding pyrophosphate: fructose-6-phosphate 1-phosphotransferase (PFP, EC 2.7.1.90) β subunit (PFP_β), which catalyzes reversible interconversion between fructose-6-phosphate and fructose-1, 6-bisphosphate. The identity of PFP _β was further confirmed by a genetic complementation test. Subcellular analysis demonstrated that PFPβ was localized in cytoplasm. Quantitative PCR and histochemical staining indicated PFP _β was ubiquitously expressed in various tissues. Furthermore, we found PFP _β could express in both the early and late phases of starch accumulation during grain filling and decreased activity of PFP _β in pfp mutants resulted in compromised carbon metabolism with increased soluble sugar contents and unfavorable starch biosynthesis. Our results highlight PFP_β functions in modulating carbon metabolism during grain filling stage.

     

Genotypic variation in partitioning of dry matter and manganese between source and sink organs of rice under manganese stress

Key message

Genetic variability in dry matter and manganese partitioning between source and sink organs was the key mechanism for Mn efficient rice genotypes to cope with Mn stress.

Abstract

Considerable differences exist among cereal genotypes to cope manganese (Mn) deficiency, but the underlying mechanisms are poorly understood. Minimal information regarding partitioning and/or remobilization of dry matter and Mn between source and sink organs exists in rice genotypes differing in Mn efficiency. The present study was aimed to assess the growth dynamics in terms of dry matter and Mn remobilization in the whole plant (leaves and tillers as source and panicles and grains as sink) during the grain development in diverse rice genotypes. The efficient genotypes accumulated higher dry matter than inefficient genotypes under low Mn level. The translocation index i.e., uptake in grain/total uptake was 0.11 in efficient genotype (PR 116) and 0.04 in inefficient genotypes (PR 111). The efficient genotype had higher grain Mn utilization efficiency of 0.71 in comparison to 0.48 of inefficient genotype indicating that in efficient genotype, Mn in grain produces more dry matter than inefficient genotypes. The efficient genotypes also had higher flag leaf area and nitrate reductase activity. The source of efficient genotypes contributed to a greater extent to developing sink but further mobilization to grain was hindered by panicle. The panicle of inefficient genotypes had higher per cent of Mn uptake than efficient genotypes indicating that Mn was least mobilized from panicle to grain in inefficient genotypes. The lower per cent uptake of Mn in efficient genotypes indicated that Mn was mobilized from panicle to developing grain and this led to higher Mn translocation index in grain of efficient genotypes. The uptake partitioning revealed that source of all genotypes mobilized the Mn towards the sink to almost same extent but it was the panicle where highest per cent uptake per plant was in inefficient genotypes and lowest in efficient genotypes. The lowest per cent uptake in panicle of efficient genotypes revealed that it supported developing grain to have highest translocation index.     

Nitrogen fertilizer increases spikelet number per panicle by enhancing cytokinin synthesis in rice

Key message

Nitrogen fertilizer enhances local cytokinin synthesis to increase flower numbers in the panicles of rice. Localized cytokinin biosynthesis is an important response to nitrogen.

Abstract

Flower number per panicle is one of the most important traits in rice productivity determination. The number of flowers is established in the early stages of panicle development. Nitrogen fertilizer application before panicle initiation is well known to increase flower number. Nitrogen increases cytokinin (CKs) biosynthesis in plants, and CKs have very similar effects as nitrogen fertilizer on panicle branching. The effects of nitrogen fertilizer on panicle branching may be mediated by CKs, in which accumulation in the inflorescence meristem can regulate panicle development, resulting in increased numbers of flowers and branches. Adenosine phosphate-isopentenyltransferase (IPT) catalyzes the rate-limiting step of CKs biosynthesis. We analyzed the effect of nitrogen fertilizer (urea) on the expression of OsIPT genes (OsIPTs). The results showed that OsIPTs were markedly increased, and CKs accumulated in panicle when nitrogen fertilizer was applied. CKs biosynthesis in the roots and leaves was not up-regulated by nitrogen. These results suggest that nitrogen fertilizer enhances local CKs synthesis to increase flower numbers in the panicles of rice. Localized CKs biosynthesis is an important response to nitrogen.     

Long-term retention of post-fire soil mineral nitrogen pools in Mediterranean shrubland and grassland

Background and Aims

The post-fire mineral N pool is relevant for plant regrowth. Depending on the plant regeneration strategies, this pool can be readily used or lost from the plant–soil system. Here we studied the retention of the post-fire mineral N pool in the system over a period of 12 years in three contrasted Mediterranean plant communities.

Methods

Three types of vegetation (grassland, mixed shrub-grassland and shrubland) were subjected to experimental fires. We then monitored the fate of ¹⁵?N-tracer applied to the mineral N pool in soils and in plants over 12 years.

Results

The plant community with legumes (mixed shrub-grasslands) showed the lowest soil retention of ¹⁵?N-tracer during the first 9 months after fire. Between years 6 and 12 post-fire, a drought promoted plant and litter deposition. Coinciding with this period, ¹⁵?N-recovery in the first 15 cm of the soil increased in all cases, except in mixed shrub-grassland. This lack of increase may be attributable to the input of impoverished ¹⁵?N plant residues and enhanced leaching and denitrification, possibly by N₂-fixing shrubs. After the drought, the deepest soil layer showed large decreases in total N and ¹⁵?N-recovery, which were possibly caused by N mineralization.

Conclusions

Twelve years after the fires, plant communities without N₂-fixing shrubs recycled a significant part of the N derived from the post-fire mineral N and this pool continued to interact in the plant–soil system.