Dinuclear gold(III) pyrazolato complexes - Synthesis, structural characterization and transformation to their trinuclear gold(I) and gold(I/III) analogues

The reaction of AuCl₃py with Na(pz∗) (pz∗ = pyrazolato, or substituted pyrazolato anion) yields stable dinuclear [cis-Au^IIICl₂(μ-pz∗)]₂ complexes. In the presence of a base, the latter undergo reduction with concomitant transformation of the dinuclear -structure to trinuclear Au^I, Au^III (containing trans Au^IIICl₂-centres) and species.     

A trade-off relationship between energetic cost and entropic cost for in vitro evolution

In this paper, we consider two complementary cost functions for the landscape exploring processes to obtain the global optimum sequence through in vitro evolution protocol: one is the entropic cost C_etp, which is based on the deviation from the uniformity of a mutant distribution in sequence space, and the other is the energetic cost C_eng, which is based on the total number of sequences to be generated and evaluated. Based on a prior knowledge about the structure of a given fitness landscapes, the conductor of the experiment can think up the efficient search algorithm (ESA), which requires the minimum number of points (=sequences) to be searched up to the global optimum. For five typical fitness landscapes, we considered their respective (putative) ESA, and based on the ESA. As a result, we found a trade-off relationship between and for every case, that is, is approximately equal to the logarithm of the volume of the sequence space. and are interpreted in terms of the information-theoretic concepts.     

Alkyl dehydrogenation in iridium tri-cyclopentyl phosphines

The iridium cyclooctadiene complex incorporating a tricyclopentyl phosphine ligand (PCyp₃), Ir(η²:η²-C₈H₁₂)(PCyp₃)Cl, has been prepared. Removal of the chloride from this complex using in CH₂Cl₂/arene solvent results in dehydrogenation (C-H activation followed by β-H transfer) of one of the alkyl phosphine rings and formation of the complexes (X = H, F) which contain a hybrid phosphine-alkene ligand. These complexes are formed alongside another product (5-20% yield) that has been identified as , which can be prepared in high yield by an alternative, and slightly modified, route. This complex is with a minor isomer that has been tentatively identified as , which results from allylic C-H activation of cyclooctadiene. Addition of H₂ to and its isomer in arene solvent (C₆H₅X, X = F, H) forms the dihydrido η⁶-arene Ir(III) complexes . In contrast, hydrogenation in CH₂Cl₂ alone results in the formation of in which the anion is now acting as a ligand through one of its aryl rings. The fluorobenzene complex can be cleanly converted to by addition of the hydrogen acceptor tert-butylethene (tbe).     

Layered iron(II) spin crossover complex constructed by NH?Br hydrogen bonds with 2 K wide thermal hysteresis, [FeH3L]Br·CF3SO3 (H3L = tris[2-(((2-methylimidazol-4-yl)methylidene)amino)ethyl]amine)

A series of compounds [Fe^IIH₃L^Me]Br·Y·nMeOH ( (1), (2), (3), (4); n = 0 or 1) were synthesized, where H₃L^Me is a hexadentate N₆ tripodal ligand of the neutral form, tris[2-(((2-methylimidazol-4-yl)methylidene)amino)ethyl]amine, and their structures and magnetic properties were investigated. The compounds 1−3 with counter anions , , and contain methanol as a crystal solvent, and show no SCO behaviors, while the corresponding Cl⁻ compounds have no crystal solvent and show a variety of SCO behaviors. The compound [Fe^IIH₃L^Me]Br·CF₃SO₃ (4) has no crystal solvent and has isomorphous structure to the Cl⁻ compounds, and shows an abrupt spin transition between the HS (S = 2) and LS (S = 0) states with a hysteresis about 2 K and large frozen-in effect below 72 K. The T_1/2↑ and T_1/2↓ values are 98 and 96 K, whose values are higher than those of corresponding Cl⁻ compound about 15 K and the width of hysteresis is narrower than that of corresponding Cl⁻ compound about 2 K. The crystal structures of 4 were determined at 296 and 93 K, where the crystal system and space group showed no change between these temperatures. The structures at both temperatures have a same 2D layered structure, which is composed of NH?Br⁻ hydrogen bonds between the Br⁻ ion and the imidazole NH groups of three neighboring cations [Fe^IIH₃L^Me]²⁺. This network structure is the same as that of corresponding Cl⁻ compound. The 600 nm light irradiation at 5 K induced the LIESST effect.     

The BK channel accessory β1 subunit determines alcohol-induced cerebrovascular constriction

Ethanol-induced inhibition of myocyte large conductance, calcium- and voltage-gated potassium (BK) current causes cerebrovascular constriction, yet the molecular targets mediating EtOH action remain unknown. Using BK channel-forming (cbv1) subunits from cerebral artery myocytes, we demonstrate that EtOH potentiates and inhibits current at lower and higher than ∼15 μM, respectively. By increasing cbv1’s apparent -sensitivity, accessory BK β₁ subunits shift the activation-to-inhibition crossover of EtOH action to <3 μM , with consequent inhibition of current under conditions found during myocyte contraction. Knocking-down KCNMB1 suppresses EtOH-reduction of arterial myocyte BK current and vessel diameter. Therefore, BK β₁ is the molecular effector of alcohol-induced BK current inhibition and cerebrovascular constriction.     

Synthesis, structure and magnetic characterization of decamethylmetallocenium ethyl tricyanoethylenecarboxylate charge-transfer salts

Ethyl tricyanoethylenecarboxylate (ETCE) is a one-electron acceptor related to tetracyanoethylene that can serve as a building block for the construction of molecule-based magnets. The reactions of ETCE with decamethylmetallocenes, (M = Cr, Mn, Fe) give three new charge-transfer salt magnets, [ETCE] 1, [ETCE] 2 and [ETCE] 3. The expected mixed pi stacking of anions and cations is obtained, with the ETCE radical anion exhibiting typical disorder over two nearly equivalent footprints. Powder diffraction supports the belief that all three compounds are isomorphous. Magnetic measurements indicate that 1 is a soft ferromagnet, ordering below a critical temperature, T_c, of 3.8 K. Compound 2 exhibits complex magnetic behavior consisting of two frequency-dependent peaks in the ac susceptibility, the first at about 11.2 K and the second at about 7 K. At 1.8 K, the compound is hysteretic and exhibits a coercive field of 10 kG. Compound 3 is a glassy, apparently canted, ferromagnet displaying an out-of-phase ac susceptibility signal below about 3 K.     

Synthesis and characterization of a family of binuclear non-heme iron monooxygenase model compounds: Evidence for a “phenolate/amide carbonyl (PAC) shift” upon oxidation

A series of binuclear iron compounds has been synthesized using diamide, bis-phenolate ligands in which the carbon-linker between the amide nitrogen atoms has been varied. Two diferrous compounds in the series, along with their two-electron oxidized, di-μ-methoxy-bridged counterparts, have been crystallographically characterized, as have the di-μ-methoxy compounds (H₂Hbab = 1,2-bis(2-hydroxybenzamido) benzene, H₂Hbach = trans-1,2-bis(2-hydroxybenzamido) cyclohexane, H₂Hbame = 1,2-bis(2-hydroxybenzamido) ethane, H₂Hbap = 1,3-bis(2-hydroxybenzamido) propane, H₂Hbabn = 1,4-bis(2-hydroxybenzamido) butane, H₂Hbapen = 1,5-bis(2-hydroxybenzamido) pentane, N-MeIM = N-methylimidazole and OMe = methoxide). are structurally very similar to previously reported diferrous compounds of this family of ligands that have been shown to be active as oxygen atom transfer catalysts. Flexibility in the carbon-linker allows some variability in the orientation of the phenolate arms of the ligands in the diferric di-μ-methoxy compounds, but the Fe₂O₂ core remains largely unchanged across the series. Two-electron oxidation of the ferrous compounds in methanol shows a substantial ligand rearrangement that is consistent with other spectroscopic, electrochemical and kinetic investigations. The loss of both phenolate bridges upon oxidation is reminiscent of the “carboxylate shift” observed in binuclear non-heme enzymes and could provide insight into the driving force behind this family of compounds’ function as a catalyst.     

Application of the Van Slyke-Cullen irreversible mechanism in the analysis of enzymatic progress curves

For enzymatic progress curves conforming to the Michaelis-Menten mechanism , the minimal fitting model cast as a system of numerically integrated differential equations is the simplified, irreversible Van Slyke-Cullen mechanism . The best-fit value of the bimolecular association rate constant is identical to the specificity constant k_cat/K_M. An illustrative example involves a fluorogenic continuous assay of the HIV protease, analyzed by the differential-equation oriented software package DYNAFIT [P. Kuzmic, Anal. Biochem. 237 (1996) 260].     

Theoretical investigation of the dissociative interchange (Id) mechanism for water exchange on magnesium(II) in aqueous solution

A dissociative (D) and a solvent-assisted dissociative interchange (I_d) water-exchange pathways for magnesium(II) in aqueous solution were simulated with density functional theory calculations. The D mechanism of includes a five-coordinated intermediate, while the I_d water-exchange pathway of proceeds with the assistance of a solvent water molecule, which supports the experimental assignment of the reaction mechanism. The intrinsic activation volume was used to differentiate between I_d and I_a mechanisms despite of the exclusion of the contribution of transmission coefficient. The calculated intrinsic activation volume for the I_d mechanism is consistent with the experimental data, and is closer to the experimental data than that for D mechanism. The I_d mechanism is suggested as the dominate water-exchange pathway of depending on the intrinsic activation volume with the assistance of the activation entropy. The calculations also showed that the influences of the explicit and bulk waters on energy barriers for D and I_d mechanisms are obviously different.     

Novel structural variation of silver(I)-pyridine complexes in nitromethane as studied by X-ray absorption spectroscopy

The XAFS spectra were measured at around the Ag K-edge of the Ag(I) ion in nitromethane (NM) with a variety of concentrations of pyridine (PY). In NM without PY, the Ag(I) ion is tetrahedrally solvated by four NM molecules similar to those in most solvents. The Ag-O bond length in NM solvent is longer than that in aqueous solution, indicating the low donating ability of NM. The mono-, bis-, tris-, and tetrakis-pyridine complexes are formed in NM by the addition of PY. The EXAFS analyses reveal that the structure of the formed PY complex in NM is linear for Ag(py)(nm)⁺, linear for , triangular for , and tetrahedral for . The longer Ag-O bond length for Ag(py)(nm)⁺ than that for and the release of bound NM molecules at the formation of Ag(py)(nm)⁺ are interpreted to be due to the strong σ donating property of PY. The Ag-N bond length (220 pm) for is intermediate between 216 pm for and 228 pm for . The formation equilibria of and are analyzed on the basis of the changeover of EXAFS spectra as a function of the total concentrations of Ag⁺ and PY in NM.     

The crystal and molecular structures of dichlorobis (5,7-diphenyl-1,2,4-triazolo[1,5-α]pyrimidine)zinc(II) (1) and dichlorobis(5,7-diphenyl-1,2,4-triazolo[1,5-α]pyrimidine)cobalt(II) (2)

The synthesis and structural studies of the new ligand 5,7-diphenyl-1,2,4-triazolo[1,5-α]pyrimidine (dptp), which can be considered as an analog of purine, and its complexes are described. Complexes were characterised by spectral measurements (IR, NMR, UV-Vis). In addition X-ray structural analysis was performed. Crystals of [Zn(C₁₇H₁₂N₄)₂Cl₂] (1) revealed the following parameters: M_r = 680.9; monoclinic for 2188 observed reflections. [Co(C₁₇H₁₂N₄)₂Cl₂] (2); M_r = 674.4; monoclinic for 1630 observed reflections.     

Trypanosoma cruzi: Immunological predictors of benznidazole efficacy during experimental infection

C3H/HeN male mice were infected with a lethal population of Trypanosoma cruzi and treated with benznidazole (Bz). Parasitemia, body weight and survival rate were registered during the therapy with significant improvement for T. cruzi-infected Bz-treated animals. Besides, flow cytometry resulted a useful method to discriminate between cured animals from those not cured by monitoring IgG₁ bound to live trypomastigotes levels. At the end of Bz therapy, the LT splenocyte compartment was studied for activation/memory cell surface markers ( and ). Cytofluorometric analysis showed that T. cruzi-infected untreated mice increased their activated LT numbers and this effect was completely abolished only in cured mice at the end of Bz administration. The same behavior was observed for the memory LT subpopulation correlating to an effector memory () displayed by T. cruzi infection. Bz treatment was able to modulate the immunological response by reducing the deleterious effect of the acute phase in all T. cruzi-infected mice.     

New applications of ruthenium solar cell sensitizers N3 and N719 as luminescence turn-on anion sensors

Optical sensing of F⁻, Cl⁻, Br⁻, I⁻, OAc⁻, , , and by cis-dithiocyanatobis(2,2′-bipyridyl-4,4′-dicarboxylic acid)ruthenium(II) (N3) and bis(tetrabutylammonium) cis-dithiocyanatobis(2,2′-bipyridine-4-COOH,4′-COO⁻)ruthenium(II) (N719) have been investigated in dimethyl sulfoxide (DMSO), by means of UV-Vis absorption and emission spectrophotometric titrations. Additions of F⁻, OAc⁻, and in DMSO solution caused obvious UV-Vis spectral changes with appearance of several isosbestic points, and remarkable emission enhancements along with large blue shifts in emission bands. The values of F⁻-induced emission intensity enhancement factor (emission quantum yield enhancement factor), I/I₀ (φ/φ₀), were found to be 40 (86) and 38 (58) for N3 and N719, respectively. No obvious spectral changes were observed upon addition of Cl⁻, Br⁻, I⁻, and in DMSO solutions. Luminescent F⁻ sensing in DMSO/H₂O (4:1, v/v) has also been demonstrated to be operative with a luminescence enhancement factor of 12, indicating that N3 is very potential for practical application as fluorescent anion sensor in aqueous solution. An interaction mechanism of anion-induced deprotonation of N3 and N719 was confirmed, and the deprotonation reaction equilibrium constants of N3 and N719 were derived as well.     

The R* rule and energy flux in a plant-nutrient ecosystem

The R* rule predicts that the species that can survive in steady state at the lowest level of limiting resource, R*, excludes all other species. Simple models indicate that this concept is not necessarily consistent with Lotka's conjecture that an ecological system should evolve towards a state of maximum power, Max(G), where G is the power, or rate of biomass production of the system. To explore the relationship in detail, we used a published model of a plant-nutrient system in which a plant can use various strategies, S, of allocation of energy between foliage, roots, and wood. We found that the allocation strategy, S_MinR*, that leads to , where is a limiting nutrient in soil pore water in our model (and equivalent to R* in Tilman's notation), is the same as the strategy, S_{MaxG_root}, for which energy flux to roots is maximized. However, that allocation strategy is different from the strategy, S_MaxG, that produces maximum power, or maximum photosynthetic rate, for the plant system, Max(G). Hence, we conclude that and Max(G) should not necessarily co-occur in an ecological system. We also examined which strategy, S_fit, was fittest; that is, eliminated any other strategies, when allowed to compete. The strategy S_fit differed from S_MinR*, S_MaxG, and S_{MaxG_root}, which we demonstrated mathematically. We also considered the feasible situation in which a plant is able to positively influence external nutrient input to the system. Under such conditions, the strategy, S_{MaxG_root}, that maximizes energy flux to roots was the same as the strategy, S_MaxR*, that leads to maximum concentration of available nutrient in soil pore water, , and not same as S_MinR*, for .     

Comprehensive inhibitor profiling of the Proteus mirabilis metalloprotease virulence factor ZapA (mirabilysin)

In this study we report for the first time the comprehensive inhibitor profiling of the Proteus mirabilis metalloprotease virulence factor ZapA (mirabilysin) using a 160 compound focused library of N-alpha mercaptoamide dipeptides, in order to map the and binding site preferences of this important enzyme. This study has revealed a preference for the aromatic residues tyrosine and tryptophan in and aliphatic residues in . From this library, six compounds were identified which exhibited sub- to low-micromolar K_i values. The most potent inactivator, SH–CO₂–Y–V–NH₂ was capable of preventing ZapA-mediated hydrolysis of heat-denatured IgA, indicating that these inhibitors may be capable of protecting host proteins against ZapA during colonisation and infection.     

Density-functional analysis of the electronic structure of tris-bipyridyl Ru(II) sensitisers

Excited state transitions and energies of a series of [Ru(bpy)₃]²⁺ type complexes incorporating the ligand, 4,4′-bis-phosphonato(methyl)-2,2′-bipyridine (dmpbpy) was investigated, and the influence of this organometallic ligand on the electronic structure of the complexes was examined using Time-Dependent Density Functional Theory (TD-DFT). Experimental data and the theoretical TD-DFT calculations were presented to support the effect of non-equivalent ligand substitution on spectral and molecular orbital (MO) energy properties on this class of tris-chelate surface sensitisers. For the series of complexes studied, it was identified that the lowest lying LUMO states were consistently found to reside on the ligand 2,2′-bipyridine (bpy) for gas phase calculations. As an implication of this, it was suggested that this could impact the effectiveness of these complexes as surface sensitisers in PEC cell applications such as the dye-sensitised solar cell (DSC) due to the lower probability of the excited state electron residing on a ligand anchored to the semiconductor substrate. However, further calculations in a solvation medium showed that the electron withdrawing nature of PO₃H₂ on dmpbpy saw the lowest lying LUMO states are populated on dmpbpy. This inhomogeneous distribution of electron density across non-equivalent ligands may have implications for further ‘spectral tuning’ of surface sensitisers. Despite the TD-DFT gas phase calculations not being corrected for solvent/media effects, the three longest wavelength bands associated with known charge transfer phenomena were identified. The symmetry allowed _MLCT in the visible region was assigned as a  ← dπ transition, the mid-UV spectrum _LC was assigned  ← π in origin. Whilst the near-UV shoulder on the blue side of _MLCT showed dσ ← dπ and π∗ ← dπ transitional character and was tentatively described as _MC/MLCT. UV-Vis absorption spectra calculated for solvated analogues containing dmpbpy indicated that the low energy transitions associated with the MLCT are subject to bathochromic shift due to solvent polarity by 0.062 eV (500 cm⁻¹) compared with the gas phase calculations, which is more highly correlated to the observed experimental transitions.     

Luminescent metalloreceptors with pendant macrocyclic ionophore: Synthesis, characterization, electrochemistry and ion-binding study

Metalloreceptors containing ruthenium(II) bipyridine unit as fluorophore and pendant macrocyclic units as ionophore have been synthesized and their luminescence and electrochemical properties have been investigated. Ion-binding study of these fluoroionophore with the anions F⁻, Cl⁻, Br⁻, I⁻, , , , , CH₃COO⁻, and and cations Na⁺, K⁺, Mg²⁺, Ca²⁺, Zn²⁺, Ba²⁺, Sr²⁺ Cd²⁺, Hg²⁺, Pb²⁺ and Cu²⁺, monitored by luminescence and ¹H NMR spectral changes, reveal strong interactions of and F⁻ for 2 and 3 and of Cu²⁺ only for 3. Luminescence titrations for 2 and 3 have been carried out to determine binding constants (K_s), and the calculated values are in the range 2.85 × 10² to 4.48 × 10⁴ M⁻¹. The ¹H NMR spectral changes for 2 and 3 with the addition of increasing concentration of F⁻ and exhibit substantial low-field shift of the CONH proton indicating its involvement in complex formation with the anions. The adduct of 2 and 3 have been isolated and characterized by ¹H and ³¹P NMR, mass and IR spectroscopy. The results are discussed in light of selectivity, structures of the anion bound complexes and their luminescence property.     

Jumping ability: A theoretical integrative approach

A theoretical integrative approach is proposed to understand the overall mechanical characteristics of lower extremities determining jumping ability. This approach considers that external force production during push-off is limited by mechanical constraints imposed by both movement dynamics and force generator properties, i.e. lower extremities characteristics. While the velocity of the body depends on the amount of external force produced over the push-off, the capabilities of force production decrease with increasing movement velocity, notably for force generators driven by muscular contraction, such as lower extremities of large animals during jumping from a resting position. Considering the circular interaction between these two mechanical constraints, and using simple mathematical and physical principles, the proposed approach leads to a mathematical expression of the maximal jump height an individual can reach as a function of only three integrative mechanical characteristics of his lower extremities: the maximal force they can produce (), the maximal velocity at which they can extend under muscles action () and the distance of force production determined by their usual extension range (h_PO). These three integrative variables positively influence maximal jump height. For instance in humans, a 10% variation in , or h_PO induces a change in jump height of about 10-15%, 6-11% and 4-8%, respectively. The proposed theoretical approach allowed to isolate the basic mechanical entities through which all physiological and morphological specificities influence jumping performance, and may be used to separate the very first macroscopic effects of these three mechanical characteristics on jumping performance variability.     

Inhibition by purine nucleotides of the release of reactive oxygen species from muscle mitochondria: indication for a function of uncoupling proteins as superoxide anion transporters

Release of reactive oxygen species (ROS), measured as the sum of hydrogen peroxide (H₂O₂) and superoxide anion radical (), from respiring rat heart and skeletal muscle mitochondria was significantly decreased by millimolar concentrations of GTP or GDP. Attempts to differentiate between the two forms of ROS showed that the release of rather than that of H₂O₂ was affected. Meanwhile, intramitochondrial ROS accumulation, measured by inactivation of aconitase, increased. These results suggest that guanine nucleotides inhibit the release of from mitochondria. As these nucleotides are known inhibitors of uncoupling proteins (UCPs), it is proposed that UCPs may function as carriers of , thus enabling its removal from the matrix compartment.     

Anionic effects on the formation of tridentate 4′-chloro-2,2′:6′,2″-terpyridine copper(II) complexes having 1:1 or 1:2 ratio of metal and ligand and their crystal symmetry

A facile synthetic procedure has been used to prepare one five-coordinate and four six-coordinate copper(II) complexes of 4′-chloro-2,2′:6′,2″-terpyridine (tpyCl) ligand with different counterions (, , , , and ) in high yields. They are formulated as [Cu(tpyCl-κ³N,N′,N′′)(SO₄-κO)(H₂O-κO)] · 2H₂O (1), trans-[Cu(tpyCl-κ³N,N′,N″)(NO₃-κO)₂(H₂O-κO)] (2), [Cu(tpyCl-κ³N,N′,N″)₂](BF₄)₂ (3), [Cu(tpyCl-κ³N,N′,N″)₂](PF₆)₂ (4) and [Cu(tpyCl-κ³N,N′,N″)₂](ClO₄)₂ (5) and versatile interactions in supramolecular level including coordinative bonding, O-H?O, O-H?Cl, C-H?F, and C-H?Cl hydrogen bonding, π-π stacking play essential roles in forming different frameworks of 1-5. It is concluded that the difference of coordination abilities of the counterions used and the experimental conditions codominate the resulting complexes with 1:1 or 1:2 ratio of metal and ligand.