Maternal-Zygotic Gene Interactions during Formation of the Dorsoventral Pattern in Drosophila Embryos

Maternal-zygotic interactions involving the three genes dorsal (dl), twist (twi) and snail (sna) are described. The results suggest that all three are involved in the process by which the dorsoventral pattern of the Drosophila embryo is established. First, the lethal embryonic mutant phenotypes are rather similar. In homozygous twi or sna embryos invagination of the ventral presumptive mesodermal cells fails to occur, and the resulting embryos are devoid of internal organs. This is very similar to the dominant phenotype described for dl; in the case of dl, however, the effect is a maternal one dependent on the mutant genotype of the female. Second, a synergistic interaction has been found whereby dominant lethality of twi- or sna-bearing zygotes is observed in embryos derived from heterozygous dl females at high temperature. The temperature sensitivity of this interaction permitted definition of a temperature-sensitive period which is probably that of dl. This was found to extend from approximately 12 hr prior to oviposition to 2–3 hr of embryogenesis. A zygotic action for the dl gene in addition to the maternal effect was revealed by the finding that extra doses of dl⁺ in the zygotes can partially rescue the dominant lethality of heterozygous twi embryos derived from heterozygous dl females. Two possible interpretations of the synergism are considered: (1) twi and sna are activated in the embryos as a result of positional signals placed in the egg as a consequence of the functioning of the dl gene during oogenesis and, thus, play a role in embryonic determination. (2) The gene products of dl⁺ and twi ⁺ (or sna⁺) combine to produce a functional molecule that is involved in the specification of dorsoventral pattern in the early embryo.     

Spatial Point Pattern Analysis by using Voronoi Diagrams and Delaunay Tessellations – A Comparative Study

Given a spatial point pattern, we use various characteristics of its Voronoi diagram and Delaunay tessellation to extract information of the dependence between points. In particular, we use the characteristics to construct statistics for testing complete spatial randomness. It is shown that the minimum angle of a typical Delaunay triangle is sensitive to both regularity and clustering alternatives, whilst the triangle's area or perimeter is more sensitive to clustering than regularity. These statistics are also sensitive to the Baddeley‐Silverman cell process.     

Canalization of Gene Expression and Domain Shifts in the Drosophila Blastoderm by Dynamical Attractors

The variation in the expression patterns of the gap genes in the blastoderm of the fruit fly Drosophila melanogaster reduces over time as a result of cross regulation between these genes, a fact that we have demonstrated in an accompanying article in PLoS Biology (see Manu et al., doi:10.1371/journal.pbio.1000049). This biologically essential process is an example of the phenomenon known as canalization. It has been suggested that the developmental trajectory of a wild-type organism is inherently stable, and that canalization is a manifestation of this property. Although the role of gap genes in the canalization process was established by correctly predicting the response of the system to particular perturbations, the stability of the developmental trajectory remains to be investigated. For many years, it has been speculated that stability against perturbations during development can be described by dynamical systems having attracting sets that drive reductions of volume in phase space. In this paper, we show that both the reduction in variability of gap gene expression as well as shifts in the position of posterior gap gene domains are the result of the actions of attractors in the gap gene dynamical system. Two biologically distinct dynamical regions exist in the early embryo, separated by a bifurcation at 53% egg length. In the anterior region, reduction in variation occurs because of stability induced by point attractors, while in the posterior, the stability of the developmental trajectory arises from a one-dimensional attracting manifold. This manifold also controls a previously characterized anterior shift of posterior region gap domains. Our analysis shows that the complex phenomena of canalization and pattern formation in the Drosophila blastoderm can be understood in terms of the qualitative features of the dynamical system. The result confirms the idea that attractors are important for developmental stability and shows a richer variety of dynamical attractors in developmental systems than has been previously recognized.     

Spatial Pattern Analysis of Plant-Parasitic Nematodes

Spatial patterns of Meloidogyne incognita, Tylenchorhynchus claytoni, Helicotylenchus dihystera, and Criconemella ornata were analyzed using Hill''s two-term local quadrat variance method (TTLQV), spectral analysis, and spatial correlation. Data were collected according to a systematic grid sampling plan from seven tobacco fields in North Carolina. Different estimates of nematode cluster size were obtained through TTLQV and spectral analysis. No relationship was observed between either estimate and nematode species, time of sampling (spring vs. fall), or mean density. Cluster size estimates obtained from spectral analysis depended on sampling block size. For each species examined, spatial correlations among nematode population densities were greater within plant rows than across rows, indicating that clusters were ellipsoidal with long axes oriented along plant rows. Analysis of mean square errors indicated that significant gains in sampling efficiency resulted from orienting the long axis of sampling blocks across plant rows. Spatial correlation was greater in the fall than in spring and was greater among 1 × 1-m quadrats than among 3 × 3-m quadrats.     

Inheritance of Pattern: Analysis from Phenotype to Gene

The form and pattern of multicellular organisms are developmentalphenotypes. They are long term processes rather than staticstructures. They involve myriad events at multiple locations.The efficient encoding of such phenotypes is analyzed here intwo stages. First, the complex developmental behavior is brokendown so it can be accounted for by cell or tissue rules. Themost effective rules have the instantaneous character foundin time-based differential equations. When integrated over timeand space, the rules produce the behavior. Second, the cytologicaland nuclear basis of the rules is sought. One thus studies acomplex phenotype in terms of its successive antecedent causes,refining understanding as one gets closer to the genome. The approach is applied here to phyllotactic (leaf placement)patterns. Leaves may be alternating in a plane, whorled, orin a helical arrangement. In all three cases a new leaf formsas an arc-like bulge at a site apical to a small number of neighboringleaves. The leaf-forming sites are irregularities in the patternof cellulose reinforcement in the surface of the apical dome.Two organ-level rules combine to produce new leaf sites. First,each established leaf develops a single reinforcement field,with gently curved reinforcement lines, on the region of thedome just above the leaf. Second, where parts of two or threesuch fields abut on the dome they combine to make the irregularityfor the next leaf. Hence a given reinforcement pattern on thedome produces a leaf; the action of the leaves in turn reestablishesthe reinforcement pattern. The cellular basis of generatinga reinforcement field appears to be a cytoskeletal responseto excessive stretch, brought on by rapid growth of adjacentleaf bases. The large scale patterns are thus traceable to cytoskeletalphenomena and from there to genes involving microtubular behavior.     

Visualization of the Embryonic Nervous System in Whole-mount Drosophila Embryos

The Drosophila embryo is an attractive model system for investigating the cellular and molecular basis of neuronal development. Here we describe the procedure for the visualization of Drosophila embryonic nervous system using antibodies to neuronal proteins. Since the entire embryonic peripheral nervous and central nervous systems are well characterized at the level of individual cells (Dambly-Chaudière et al., 1986; Bodmer et al., 1987; Bodmer et al., 1989), any aberrations to these systems can be easily identified using antibodies to different neuronal proteins. The developing embryos are collected at certain times to ensure that the embryos are in the proper developmental stages for visualization. After collection, the outer layers of the embryo, the chorion membrane and the vitelline envelope that surrounds the embryo, are removed before fixation. Embryos are then incubated with neuronal antibodies and visualized using fluorescently labeled secondary antibodies. Embryos at stages 12-17 are visualized to access the embryonic nervous system. At stage 12 the CNS germ band starts shortening and by stage 15 the definitive pattern of the commissure has been achieved. By stage 17 the CNS contracts and the PNS is fully developed (Campos-Ortega et al. 1985). Thus changes in the pattern of the PNS and CNS can be easily observed during these developmental stages.Download video file.^{(52M, mov)}     

Live Imaging of Bicoid-Dependent Transcription in Drosophila Embryos

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Effect of Anoxia on the Spatial Pattern of Electric Potential Formed Along the Root

Spatial patterns of surface electric potential of a root ofazuki bean (Phaseolus chrysanthos) were investigated. A multi-electrodemeasuring system was used to measure the spatial pattern andits variation with time. It was found that a periodic patternwas spontaneously formed along the root but it disappeared underanoxia. Supply of air made the pattern recover. Although thechange in electric potential started from the root tip underanoxia, it occurred first near the seed in the recovery processwhen air was supplied. To explain this phenomenon, a simplifiedtheoretical model was proposed. The model is described by adifferential equation for a concentration of oxygen expressinglongitudinal diffusion and consumption of oxygen within theroot. Assumption of a threshold of the oxygen concentrationneeded to activate a respiration-dependent pump led to a quantitativeexplanation of the above behaviour of surface electric potential.It was suggested that the pattern belongs to a group of self-organizeddynamic structures which are maintained through energy metabolismby a supply of material from outside. Phaseolus chrysanthos, bean root, electric potential, anoxia, self-organized structure, respiration-dependent pump     

A Force Balance Model of Early Spindle Pole Separation in Drosophila Embryos

The formation and function of the mitotic spindle depends upon force generation by multiple molecular motors and by the dynamics of microtubules, but how these force-generating mechanisms relate to one another is unclear. To address this issue we have modeled the separation of spindle poles as a function of time during the early stages of spindle morphogenesis in Drosophila embryos. We propose that the outward forces that drive the separation of the spindle poles depend upon forces exerted by cortical dynein and by microtubule polymerization, and that these forces are antagonized by a C-terminal kinesin, Ncd, which generates an inward force on the poles. We computed the sum of the forces generated by dynein, microtubule polymerization, and Ncd, as a function of the extent of spindle pole separation and solved an equation relating the rate of pole separation to the net force. As a result, we obtained graphs of the time course of spindle pole separation during interphase and prophase that display a reasonable fit to the experimental data for wild-type and motor-inhibited embryos. Among the novel contributions of the model are an explanation of pole separation after simultaneous loss of Ncd and dynein function, and the prediction of a large value for the effective centrosomal drag that is needed to fit the experimental data. The results demonstrate the utility of force balance models for explaining certain mitotic movements because they explain semiquantitatively how the force generators drive a rapid initial burst of pole separation when the net force is great, how pole separation slows down as the force decreases, and how a stable separation of the spindle poles characteristic of the prophase steady state is achieved when the force reaches zero.     

外源中心体在哺乳动物胚胎发育中的遗传机制

中心体是一个非膜包被的半保留细胞器,由一对相互垂直的圆柱形中心粒及其周围大量的高电子密度的蛋白质-中心体基质(pericentriolar material,PCM)组成.在所有哺乳动物细胞中,中心体(centrosome)作为主要的微管组织中心(microtubule organizing centers,MTOCs),起到组装和稳定微管的关键功能.在大多数哺乳动物精子形成过程中,精子保留了近端中心粒,失去了大部分的中心体旁蛋白和远端中心粒,而在卵母细胞形成过程中两个中心粒被逐渐降解,主要的中心体旁蛋白被保留了下来,弥散于卵胞质中.受精后,在卵母细胞中精子中心粒被进一步降解,来源于卵母细胞和精子的中心体旁蛋白形成受精卵的MTOCs在胚胎分裂过程中行使功能.但在小鼠等啮齿类动物精子形成过程中,两个中心粒全部被降解,因此受精卵中的MTOCs主要由来源于卵母细胞中心体旁蛋白组成.在大多数哺乳动物核移植胚胎中.外源中心粒在胚胎1-细胞期即被降解,而是来源于供体细胞和受体卵母细胞的中心体旁蛋白形成重构胚的MTOCs指导纺锤体形成,中心粒是在囊胚期才从头合成的.在灵长类中,来源于精子的中心粒能与PCM一起组成典型的中心体在胚胎分裂过程中行使功能,但在其核移植胚胎中,体细胞中心体和去核卵母细胞中剩余的中心体旁蛋白不能有效的组装形成功能性中心体,这可能是灵长类哺乳动物体细胞克隆失败的一个关键原因. 成过程中,两个中心粒全部被降解,因此受精卵中的MTOCs主要由来源于卵母细胞中心体旁蛋白组成.在大多数哺乳动物核移植胚胎中.外源中心粒在胚胎1-细胞期即被降解,而是来源于供体细胞和受体卵母细胞的中心体旁蛋白形成重构胚的MTOCs指导纺锤体形成,中心粒是在囊胚期才从头合成的.在灵长类中,来源于精子的中心粒能与PCM一起组成典型的中心 在胚胎分裂过程中行使功能,但在其核移植胚胎中,体细胞中心体和去核卵母细胞中剩余的中心体旁蛋白不能有效的组装形成功能性中心体,这可能是灵长类哺乳动物体细胞克隆失败的一个关键原因. 成过程中,两个中心粒全部被降解,因此受精卵中的MTOCs主要由来源于卵母细胞中心体旁蛋白组成.在大多数哺乳动物核移植胚胎中.外源中心粒在胚胎1-细胞期即被降解,而是来源于供体细胞和受体卵母细胞的中心体旁蛋白形成重构胚的MTOCs指导纺锤体形成,中心粒是在囊胚期才从头合成的.在灵长类中,来源于精子的中心粒能与PCM一起组成典型的中心 在胚胎分裂过程中行使功能,但在其核移植胚胎中,体细胞中心体和去核卵母细胞中剩余的中心体旁蛋白不能有效的组     

Pattern formation in the Drosophila embryo

Three plausible hypotheses about developmental commitments in the Drosophila embryo propose that: (1) a micromosaic of localized determinants in the egg trigger somatic commitments; (2) monotonic anterior-posterior and dorsal-ventral gradients in the egg specify positions by a series of threshold values; (3) sequential subdivision of the early embryo into 'anterior' or 'posterior' 'middle' or 'end', 'dorsal' or 'ventral', 'odd' or 'even' compartmental domains encodes the somatic commitment in each region in a combinatorial epigenetic code. Evidence in favour of such a combinatorial code includes its capacity to account for major features of transdetermination and for many single and coordinated homoeotic transformations. In particular, both these metaplasias often cause transformations between ectodermal tissues such as antenna and genitalia, whose anlagen lie far apart on the blastoderm fate map. This phenomenon is not naturally explained by monotonic gradient models. In contrast, not only transformation between distant regions of the fate map, but also the observed geometries of compartmental boundaries on the wing, and probable ones in the early embryo, are naturally explained by reaction-diffusion models. These systems form a discrete succession of differently shaped monotonic and nonmonotonic eigenfunction gradient patterns of the same morphogens, as the tissue containing the chemical system changes in size and shape, or in other parameters. The successive mirror symmetries in non-monotonic gradients predict that distant regions of the embryo make similar developmental commitments, and also predict specific classes of pattern mutants forming mirror symmetric structures along the embryo on a variety of length scales. Finally, reaction diffusion systems spontaneously generate transverse gradients of the underlying chemicals when more than one eigenfunction is amplified at once, and therefore specify two-dimensional positional information within domains. Although it is attractive, no feature of the combinatorial code hypothesis is verified. Current data relating to whether the sequential formation of compartmental boundaries actually reflects the commitment of the two isolated 'polyclones' to alternative fates, whether any genes act continuously to maintain disc commitments, and whether homoeotic mutants actually 'switch' disc determined states, are assessed.     

Pattern formation in the Drosophila eye

The insect compound eye is one of the most precise and highly ordered patterns in the living world. It develops from an unpatterned simple epithelium by a series of cell fate decisions and complex morphogenetic movements. In the first days of metamorphosis, this interplay is particularly noticeable. Recent insights have revealed how interactions between neighboring cells drive the process. Interaction between Delta on cone cells and Notch proteins on the surface of their neighbors induces the first pigment cells to differentiate. The primary pigment cells then express a Nephrin protein, Hibris, that interacts with a different Nephrin, Roughest, on their neighbors. Heterophilic adhesion between Hibris and Roughest results in remodeling contacts between cells to favor their contact with the pigment cells. In conjunction, the primary pigment cells signal to their neighbors through the EGF receptor to survive, rather than undergo apoptosis. This sorting and culling process results in a sculpted pattern with a precise number and position of cells that is repeated hundreds of times in each compound eye.