西葫芦CCD基因家族鉴定及其在果实发育中的表达
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福建省属公益类科研院所基本科研专项(2019R10317);


Genomewide Identification and Expression Analysis of CCD Gene Family in Fruit Development of Zucchini
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    摘要:

    类胡萝卜素裂解双加氧酶(carotenoid cleavage dioxygenase, CCD)是类胡萝卜素氧化裂解途径中的关键酶,在植物生长发育、香气形成及胁迫响应等过程中均发挥着重要作用。该研究运用生物信息学方法从西葫芦全基因组中鉴定出13条具有完整RPE65保守结构域的CCD基因,为进一步解析CCD基因家族在西葫芦中的功能奠定基础。结果表明:(1)聚类分析显示,13个西葫芦CCD基因编码的蛋白可分为CCD1、CCD4、CCD7、CCD8、NCED、CCD1like共6个亚组,且CCD8和CCD7亚组与其他家族成员的遗传距离较远。(2)顺式作用元件预测分析发现,CCD基因启动子中含有光信号、激素、环境胁迫和生长发育响应元件。(3)转录组数据分析显示,CCD家族基因具有组织表达特异性,其中3个CCD基因在组织中不表达,CpCCD1基因在叶和果实中显著高表达。(4)在果实发育过程中,8个CCD基因呈现上调表达,2个CCD基因呈现下调表达,其中CpCCD1、CpCCD4aCpCCD4bCpCCD8a这4个CCD基因在果实膨大生长期或成熟期出现显著高表达,推测它们可能在西葫芦果实发育过程中具有重要的调控作用。

    Abstract:

    Carotenoid Cleavage Dioxygenase (CCD) is a key enzyme in the oxidative cleavage pathway of carotenoids, and plays an important role in plant growth and development, aroma formation and stress response. In this study, 13 CCD genes with complete RPE65 conserved domain were identified from the whole genome of zucchini by bioinformatics method. The above results provides a reference for the subsequent analysis of the function of CCD gene family in zucchini. The results showed that: (1) cluster analysis showed that 13 CCD genes encoding proteins of zucchini could be divided into six subgroups: CCD1, CCD4, CCD7, CCD8, NCED and CCD1like, then CCD7and CCD8 subgroups have a long genetic distance from other family members. (2) Cis acting element prediction analysis found that the CCD gene promoters contained light signal, hormone, environmental stress and growth and development response elements. (3) Transcriptome data analysis showed that CCD family genes had tissuespecific expression, and three CCD genes were not expressed in tissues, while CpCCD1 was highly expressed in leaves and fruits. (4) During fruit development, eight CCD genes were upregulated and two CCD genes were down regulated, and four CCD genes, CpCCD1, CpCCD4a, CpCCD4b and CpCCD8a were significantly high expression in fruit expanding growth and maturation, suggesting that they may play an important regulatory role in fruit development of zucchini.

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陈敏氡,王 彬,李永平,等.西葫芦CCD基因家族鉴定及其在果实发育中的表达[J].西北植物学报,2022,42(7):1124-1132

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  • 在线发布日期: 2022-08-22
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