成人视网膜假定蛋白基因ARHP的克隆及生物信息学分析
DOI:
作者:
作者单位:

作者简介:

通讯作者:

中图分类号:

基金项目:

国家重点基础研究发展规划项目(973)(G1998051200).


Cloning and Bioinformatics Analysis of a Novel H.sapiens Adult Retina Hypothetical Protein Gene ARHP
Author:
Affiliation:

Fund Project:

This work was supported by a grant from The Special Funds for Major State Basic Research of China (G1998051200).

  • 摘要
  • |
  • 图/表
  • |
  • 访问统计
  • |
  • 参考文献
  • |
  • 相似文献
  • |
  • 引证文献
  • |
  • 资源附件
  • |
  • 文章评论
    摘要:

    从UniGene库中选取编号为BG222624来自人鼻咽组织的表达序列标签(EST)序列,联网到NCBI调用Blast服务器分析,发现该EST序列是一个代表新基因的未知序列.利用Blast检索GenBank的nr数据库和EST数据库,构建EST重叠群,联网到NCBI的ORF finder服务器,分析发现该EST重叠群具有完整的阅读框架.分别在cDNA序列阅读框架的起始密码子和终止密码子的两侧设计引物,以人胎脑cDNA文库为模板,进行PCR扩增,测序确定该基因的cDNA全长序列.该基因cDNA序列全长为1 672 bp,阅读框架位于第304~1 557位之间,编码由417个氨基酸组成,分子质量为46.58 ku的蛋白质,其理论pI为4.21.将蛋白质序列通过NCBI的Blast服务器进行序列相似性分析,发现该基因编码的蛋白质和成年小鼠视网膜未知蛋白(BAB32214)同源.经与国际人类基因组命名委员会协商定名为成人视网膜假定蛋白(adult retina hypothetical protein, ARHP),GenBank登录号为AY174896.生物信息学分析表明,该蛋白质可能为一参与转录调控的核蛋白.ARHP基因定位在染色体5q35,跨越35 163 bp,含4个外显子和3个内含子.在基因的5′非翻译区有2个CpG岛.

    Abstract:

    BLAST analysis suggested that a cDNA fragment (GenBank accession number BG222624) derived from human nasopharynx might represent a novel human gene. Applying the bioinformatics and experimental technique, a novel human gene have been cloned from the fetal brain cDNA library. Since this fragment contained a complete open reading frame(ORF) of 1 254 bp with a stop codon in its upstream and poly(A) signal in its downstream, it could be concluded that it is a full-length gene (GenBank accession number AY174896), which was named as adult retina hypothetical protein(ARHP). The full-length cDNA of ARHP gene is 1 672 bp, coding for a 417 amino acids polypeptide with a predicted molecular mass of 46.58 ku and isoelectric point of 4.20. The deduced amino acid showed 70% homology with a M.musculus protein BAB32214. Bioinformatics analysis suggested that the protein may be a nucleus protein regulating gene transcription. The new gene is comprised of four exons, with three intervening introns and it is localized to chromosome 5q35. It have been found that there are two CpG islands in 5′ UTR of this gene.

    参考文献
    相似文献
    引证文献
引用本文

李峰,蒋卫红,尹志华,杨旭宇,冯湘玲,刘卫东,姚开泰.成人视网膜假定蛋白基因ARHP的克隆及生物信息学分析[J].生物化学与生物物理进展,2003,30(6):930-934

复制
分享
文章指标
  • 点击次数:
  • 下载次数:
  • HTML阅读次数:
  • 引用次数:
历史
  • 收稿日期:2003-04-15
  • 最后修改日期:2003-05-28
  • 接受日期:
  • 在线发布日期:
  • 出版日期: