303份甘薯地方种SSR遗传多样性与群体结构分析
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江苏徐淮地区徐州农业科学研究所/中国农业科学院甘薯所;江苏师范大学;

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303 Sweetpotato Landraces of SSR Genetic Diversity and Population Structure Analysis
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    摘要:

    摘要:本研究利用SSR分子标记,对我国303份甘薯地方种进行了遗传多样性和群体结构分析。进一步明确了甘薯地方种间的遗传多样性和亲缘关系,为优异资源挖掘和品种改良提供了参考。利用SSR建立研究材料的0,1数据库,通过NTSYS-pc 2.10软件计算Nei72遗传距离矩阵,将遗传距离矩阵导入MEGA 6.06,计算平均遗传距离和聚类分析;并利用STRUCTURE 2.3.4对303份地方种进行群体结构分析。结果表明:30对SSR引物共检测出203条多态性位点,每对引物检测到1~14条多态性条带,平均每对引物获得6.77条。303份材料的平均遗传距离为0.564,聚类分析在遗传距离为0.087处可以把303份材料分成5个类群,其中第Ⅴ类群在遗传距离为0.115可分为A、B、C三个亚群。群体结构分析将303份材料划分成了5个稳定的群体,群体结构划分与聚类有相似的结果,其中70份材料Q值小于0.6,属于混合亚群。

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    Abstract: Genetic diversity and population structure of 303 sweetpotato landraces was analyzed by SSR markers.This study aims to understand the genetic relationship among sweetpotato landraces , and provide reference for the selection of excellent germplasm resource and the improvement of germplasm. Method:Using SSR to establish the 0, 1 database of the trial materials;The ntsys-pc 2.10 software was used to calculates the Nei72 genetic distance matrix;The genetic distance matrix was imported into MEGA 6.06 to output average genetic distance and cluster analysis. The results showed that 203 polymorphic sites were detected by 30 SSR primers, and 1 to 14 polymorphic bands which average 6.77 polymorphisms were detected for each primer. The average genetic distance of 303 accessions was 0.564. Cluster analysis in 0.087 genetic distance can divide 303 accessions into five groups, of which the fifth group in 0.115 genetic distance is divided into groups of A, B, and C. Population structure analysis of 303 accessions is divided into five groups. Clustering results coincide with the population structure.Q value of 70 accessions is less then 0.6 ,and these accessions were clustered into the mixed subgroup.

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苏一钧,王娇,戴习彬,等.303份甘薯地方种SSR遗传多样性与群体结构分析[J].植物遗传资源学报,2018,19(2):343-351.

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  • 收稿日期:2017-06-05
  • 最后修改日期:2018-01-10
  • 录用日期:2017-07-07
  • 在线发布日期: 2018-03-19
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